RNA id: TU395316


Basic Information

Item Value
RNA id TU395316
length 241
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G333798
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17756558 ~ 17756798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGTTCACAATTTGTTAGGATTTCCAGAGTAGCAGCTTATACAGgacagacgctccacatacaAGAGATTTTTAAAGGAGTATAATGGTGAAGTTTGCATCTATggaaggtaaagctgtaacttcaggtTTTTTGGGGGCTGCTGAGAgaatgtctgtttatagctgctataatgtaagtgataacagaaactcattgagcaacattaaacattccacaacattaaacattactgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395315 lncRNA upstream 16 17756325 ~ 17756542 (+) True G333797
TU395312 lncRNA upstream 276 17743278 ~ 17756282 (+) True G333795
TU395313 lncRNA upstream 11518 17741401 ~ 17745040 (+) False G333795
TU395294 lncRNA upstream 44178 17707722 ~ 17712380 (+) True G333779
TU395307 lncRNA upstream 85933 17670416 ~ 17670625 (+) True G333791
TU395317 lncRNA downstream 926 17757724 ~ 17757929 (+) True G333799
TU395319 lncRNA downstream 25022 17781820 ~ 17796521 (+) False pan3
TU395321 lncRNA downstream 92997 17849795 ~ 17850795 (+) True G333801
TU395484 lncRNA downstream 148155 17904953 ~ 17905225 (+) True G333937
TU395485 lncRNA downstream 150568 17907366 ~ 17907681 (+) True G333938
XM_026938142.2 mRNA upstream 16973 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 50440 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 50440 17678898 ~ 17706118 (+) False boc
XM_034298054.1 mRNA upstream 102945 17636431 ~ 17653613 (+) False LOC113541191
XM_026937954.2 mRNA downstream 4733 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 185630 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 204190 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 216406 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 330849 18087647 ~ 18097915 (+) True ythdf3
TU394792 other upstream 454554 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 454861 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 456547 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 456547 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 461504 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 229964 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 558558 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 558560 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 558562 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 558885 18315683 ~ 18323295 (+) True mtfr1

Expression Profile