RNA id: TU395317


Basic Information

Item Value
RNA id TU395317
length 206
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G333799
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17757724 ~ 17757929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGAAAAAAACGTAATAACTTTCTCTAAGCTGTCAGAGGATTGTTCCATGGATGGTGATTAAGATTAGGCTTTAAACTTACCTAACacgtttttcattttcataccaCACGATTGTCGGTTTGGGACTTCCCTCAGACACACATAGGACATGTGCAGTGTAATCTTCACCGCCACTGACTGTCAGCTGTGGCACTGAGGGTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395316 lncRNA upstream 926 17756558 ~ 17756798 (+) True G333798
TU395315 lncRNA upstream 1182 17756325 ~ 17756542 (+) True G333797
TU395312 lncRNA upstream 1442 17743278 ~ 17756282 (+) True G333795
TU395313 lncRNA upstream 12684 17741401 ~ 17745040 (+) False G333795
TU395294 lncRNA upstream 45344 17707722 ~ 17712380 (+) True G333779
TU395319 lncRNA downstream 23891 17781820 ~ 17796521 (+) False pan3
TU395321 lncRNA downstream 91866 17849795 ~ 17850795 (+) True G333801
TU395484 lncRNA downstream 147024 17904953 ~ 17905225 (+) True G333937
TU395485 lncRNA downstream 149437 17907366 ~ 17907681 (+) True G333938
TU395521 lncRNA downstream 254998 18012927 ~ 18015594 (+) True G333966
XM_026938142.2 mRNA upstream 18139 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 51606 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 51606 17678898 ~ 17706118 (+) False boc
XM_034298054.1 mRNA upstream 104111 17636431 ~ 17653613 (+) False LOC113541191
XM_026937954.2 mRNA downstream 3602 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 184499 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 203059 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 215275 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 329718 18087647 ~ 18097915 (+) True ythdf3
TU394792 other upstream 455720 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 456027 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 457713 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 457713 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 462670 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 228833 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 557427 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 557429 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 557431 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 557754 18315683 ~ 18323295 (+) True mtfr1

Expression Profile