RNA id: XM_026937954.2


Basic Information

Item Value
RNA id XM_026937954.2
length 4742
RNA type mRNA
GC content 0.50
exon number 18
gene id pan3
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17761531 ~ 17796521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cggCGCTGGTTGGTGCTTTAGCTGAACGGAGCCCGAAAACAACAACAGCGTGATCCGAGCTGAACAACAGCGCCgagctgctttctttcttttacttttttctttttctttttttttttaaatttaaacgtGCACTGCGATCATTTCTGAAGCGCGATGGCCGTCTGACGGTTCGGTCTGGATGATACGGTTGATTTTTGTTGCCGTTTTTTCATGCGTTTGGCTGGGATTAAAGTGTTTTAGGTCTCCCTATGTTTGAGCGTCTTCCGGCGGCGGTGGCGGCATCAGCGGTGCCATGAATAGTGGACTCCCGGTCTCGGCTGCTCCGCTCGGCGGTGTCGGAATACCGGGCGTCAAGGTGAAATTCTGCCGCTATTACGCGAAAGACAAGACTTGCTTTTATGGCGACGATTGCCAGTTCTTGCATGAGGATCCGTCCGCGGCGAGTGCTGTGCAcggcggaggaggaggaggcagcgGCAGCCCGGTGACTTTAGCCCTCGCCGGCGGGGCAGTGAGCACCGCGGCGGCTGTAGCAGGGTACCCGCTCGCTGGGAACGCAGTAGCGGCGTGTCCGAGCGGAGGTCCGGCGGGTGTCGCCAAAAAGAGTGATGCTCTCGGGCCTGCAGGAGCGGCTCTGGACGGCCAGTTGTTGAGCATCGCTGGGATGGACGGTGGGGCGCTCAGTGATGCCAATCTGACCAACTCCTATTTCAGCAGCAGCTTTATTGGAGTCAATGGGTTTGGAAGCCCAGCAGAGTCCAAATACTCAATGATGCAGaggatgaccagcagcagcagctccccGAGTCTCCTTAATGACGGTGCCAAGAATTTCAGCCACAGCGCTCATGATCCTGTAAGTTCCCCCACTTCCTCCCTGTTTAGCGACTTTGGTGCTTTGAGCATAACACAGAGGAGAAAGGCTCCCAATCCCGCTGCCACAGAGTTCATCCCTAAAGGAGCACCACGCATGTCCACGATGTCTCAGGCAGCTGTACCGACATTTCCCTCGCCGCTATTCCCCCATCCCAGTCTGAGCGGCTCAGCCGCAGCGGGACTCGCGCCAGGTATGTCTTTGTCTGCTGGGTCGTCTCCTCTCCACTCGCCCAAAATCACTCCCCACACCTCACCCGCCCCCCGGCGCCGTAGCCACACCCCAAACCCCAACCCAGCCAATTACATGGTGCCCACCACGGCGTCAGAGCAAGGAGGCGGTGCCCACATCATCCAGAAGGAGACTGTAGGAGGAACCACCTACTTTTACACTGATAACACCCCTGCTCCCATGACTGGAATGGTGTTTCCAACGTACCATATCTACCCACAAACAGCACCTCATGTGGCGTACATGCAGCCCAAAGCCAACGCTCCGTCCTTCTTTATGGCTGACGAGCTCAGACAGGAGTTGATTAACAGGCATTTGATAACGATGGCCCAAATCGATCAGTCTGAGAACCCAGgagTCCCGTCTGAGGTGGACAGCTACCATAGCCTGTTTCCCCTGGAGCCTCTTCTGCCCCCCAACCGCCTCCAGAAAACCAGCAACTTCAGTTACATTACTTCCTGTTACAAGGCGGTCAACAGCAAAGATGACCTGCCTTACTGTCTCAGGAGGATACATGGCTTCAGGCTGGTGAACACCAAGTGCATGATGCTGGTCGACATGTGGAAGAAGATCCAGCACTCCAATGCTGTCACTCTCCGAGAAGTCTTTACCACCAAGGCTTTTGGAGATCACTCGTTGGTGTTCTCTTATGACTTCCATGCCGGGGCTGAGACCATGTACAGCAGGCACTTCAACGACCCAACGGCTGACTCTTATTTCACCAAGAGGAAGTGGGGTCCACACgagcctcctcctcctcggcAGCATGCCGGTCTGCTGCCTGAGTCTCTGATCTGGGCCTACATCGTGCAGCTGAGCTCGGCCCTGCGCACCATCCACACTGCCGGCCTGGCCTGCAGGGTCATGGACCCCAGCAAGATCCTCATCACTGGAAAGActcgGTTACGGGTGAACTGTGTAGGCGTGTTTGATGTCTTAACATTTGACAATAGTCAGACCAACCACTTGGCCCTCATGCCCCAGTACCAGcaAGCAGATCTGATCTCTCTGGGGAAGGTGGTATTGGCGCTGGCCTGCAACTCTCTGGCTGGCATTCAGAGAGAGAACTTGCAGAAAGCCATGGAGCTCGTGTCTATCAACTACTCATCCGACCTCAAGAACCTCATCCTGTACCTGCTTACGGAGCAGAGTCGCCTGCGTAGCGTCAATGACATCATGCCCATGATCGGAGCCAGATTTTACACTCAGCTGGACGCTTCACAGATGAGGAATGACGTCATTGAGGAAGATCTGGCCAAGGAGGTGCAGAACGGCCGCTTGTTCCGCCTTCTGGCCAAACTGGGAACCATCAATGAGAGACCAGAATTCCAGAAGGATCCGACGTGGTCTGAGACAGGAGATCGCTACCTGCTGAAGCTCTTCAGAGATCACCTGTTCCACCAGGTGACTGAAGCAGGCACGCCTTGGGTCGACCTGAGCCACATTGTGTCGTGTCTTAATAAACTGGATGCCGGCGTGCCCGAGAAGATCAGCCTGGTGTCTCGGGATGAGAAGAGCGTGCTGGTGGTGACCTACTCAGACCTAAAGCGCTGCTTTGACAGCACCTTCCAGGAACTGCTGGCTGCCGCCAACGGCTCACTGTAGCGCCCCTCACAGGCATGGGGTGGGACTGCCTGAATCGGAGCACATTGCACTACAGTGAACGAAGACGGGCACAGCTCGAACGATCTTAACGGCCAGAACGGTGCCAGCTGGTTGCTCACCTCCAGTCAGATACACTGTCCTAAAAGGaagttgtacttttttttcctaaagtgtatttttttagttttcctaAACTCACAGCTTCTGAATTCTGAACCTGTTGACAGCTGTGATGAATTTTTTTAGACACggggaacaacaacaacattattgTCGATAAGAAACATTAAGGACAATttcctgcttttatttttcttggtttttatttttttccattggaGGATGCACTAAGAATTTtaagtttttcctttttttaaaaaataaaaataaaaaaatcatgtgggTGGTGTCCACAGGGTGACACAAGAAAAGGATGAGGACTAGGTTTCCGGGGAAAAAAGCGATCTCTTCTTTAGGCACTGCGAGTCGGGACAGACCACTTGCCACGTGTGCAGAACCCAGACCACTTTCTGCCTCCGCTGTCATTTAGATAGGACAAACCATTGTGCTTATAAGAGAGGGGAGGGGGCGGCCAAATCGCTAAGAAGACTGACCACTGTTTGAACATGAGGCATGTGGTGTGATATGGTATGCTCCCGTTGTCCTGCACCCCCCCGCCAGCTGGTGAGACTTTCCAGAGTCACATGTGATTGCAAAGAGAAGGTTGCTTCATTACTGCCTGGGTTCTCACTCTGTCCATGTAACTTTGGTGGCACTGACAAAGGGGTGCTTTCTCCTGTTGCTGTGTAAGACTTTATTAGACTTATGCAACCTCcattaaattttttctttttttttttttttttttttaaattttcatggATGCTTTTTGCAATGTGATATGAATCAACAATTGTGTGAatggatttttcttttgtttcgtTTGTTTGTTGTCTTTTTCAATCAGGCTTTTTAGGTCTGGAAAGGAACCAAAGAACTGGACCACATTTAGGAAGGGAACCAGTTCTGCCTCTGTGGAATCTCCTCTCCCTCTGCTCCCTTTTTGTGGAGCAATCATTTAGATTACGCTCACATTTTCACTCTTCCCCACTCTCCAAGCTGGTTGTTGTATTTTGGACTGAATCAATAGCTCTTATGTGGTGgttcttttcttttacacacCCAGCTCTTGCGCAGTGATACATGATGAGATGTTTGAACTCTcactctgaccaatcccactaaAACTTCTGGGAAGGATGGTGGAAAGGGTAGGGCCAGTTTGAGGgttgtgtttgaattttttttttttaacaccacatTTCTCACCTGAAGATCATGTGATGGTAACATGCTGGGAAAACGGAACAGCCGTTGATAAAACAGCAGGTAACAGAGGGGGAGTGTTTGGGGGGTTGGGGTGGGGGGTAGAGTTGGTTGTTTTTGCACTTGGAGCAGTTTTGGCATTCTCTCAGGACGACTCGACCCGAATTAAGCCAATGATTGAATGTGTTTTGACCCGTCATTGGTGACCCTTTCCAATCATGAGTCGAGCTACAGTGGAAAAGGTGCGACGTGAGCAGGTCTGGCTGAGCCACACTGAACATGGAGGGCATAGGATGGAGCATGCTATACTGAGCTGATGTGAGGATGCTGTGTATCGAATTgtacttttgtgtttttctttttgtgataGTCAAAACAGCAGTGAATCTGGTGCCaagcctctcctttttttttttttttttcctcctccccTCCCCAGAAATACACACTTGAGTCCTTCCAGCGTATCCAGCCAACACGCAGCTAATtctcatatcatatcatgaaTATCATGACCCTATTCCCCAAGGATCACACTCCAGTAAAAATGTGTGCtaacccttacacacacacacacacacacacacacacaaacactcacacaataTCTTAGTACTTTTAATGCCCTACTTGTGTTTCATTGTCTCACATTTTGCAATATTTGTGTGTACAAcagtattttaataaagaatacaaaacttta

Function

GO: NA

KEGG:

id description
K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395317 lncRNA upstream 3602 17757724 ~ 17757929 (+) True G333799
TU395316 lncRNA upstream 4733 17756558 ~ 17756798 (+) True G333798
TU395315 lncRNA upstream 4989 17756325 ~ 17756542 (+) True G333797
TU395312 lncRNA upstream 5249 17743278 ~ 17756282 (+) True G333795
TU395313 lncRNA upstream 16491 17741401 ~ 17745040 (+) False G333795
TU395321 lncRNA downstream 67384 17849795 ~ 17850795 (+) True G333801
TU395484 lncRNA downstream 122542 17904953 ~ 17905225 (+) True G333937
TU395485 lncRNA downstream 124955 17907366 ~ 17907681 (+) True G333938
TU395521 lncRNA downstream 230516 18012927 ~ 18015594 (+) True G333966
TU395506 lncRNA downstream 239328 18021739 ~ 18026962 (+) True G333953
XM_026938142.2 mRNA upstream 21946 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 55413 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 55413 17678898 ~ 17706118 (+) False boc
XM_034298051.1 mRNA upstream 107918 17636431 ~ 17653613 (+) False LOC113541191
XM_026938160.2 mRNA downstream 160017 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 178577 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 190793 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 305236 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 432452 18214863 ~ 18217206 (+) True bhlhe22
TU394792 other upstream 459527 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 459834 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 461520 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 461520 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 466477 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 204351 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 532945 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 532947 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 532949 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 533272 18315683 ~ 18323295 (+) True mtfr1

Expression Profile