RNA id: TU395479


Basic Information

Item Value
RNA id TU395479
length 2545
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G333932
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17899839 ~ 17902383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttttgttttattccctttttaTTGCAAGGTTGTCAATGCCTATTTACTGTTACTGGTGAGAAAGTATAACAAGCTCCATCGGGAAAAGGCCCTTTTTGTTGATTCATATGAAATTACACAGATCTGGAATTGTGGGAAGTCCAAATTAAAGATATGTGAACGGATGTATAAGACTGTATTTAATAGGAGAAACTCCAACATATAATATTAGAACATTATGGTAACTAATAGTGCAgcttaattaatgtttattgttttatatttcagcATGATCCTGAAAAGTATTAAGTAATTTTGGGTGAATGGGTGGAAGATTTTTCGTGGTGGAAATGAAGTCGGAGATATAAGTTTTGTTCGTCTTGACCCAAGGATTCCAAATATATAAGACAATGGAATCTGTGATGAACGGTTCAAAATTTATGgtcatttttgtacatttttttgttttgatcactGTAGCACCACTGCTTAGCCGATCAGGGTGAGACTTTGCACCACTGGAGACTGGTGGAGTACTAGCATCCCTCAAAATTTCATGTCTTTAGGCCTTACGGTTTGGTCTGcaagattcaattcaattttatttatatggcgattttaacaatggacattgtcaccaagcagctttatagaaataaatacattcaggatataaatcgTAAAATGTATGAttgtatgaatgtatgaatttatccctaatgagcaagccagaggtgatggtggtgaggaaaacctccctgagacggtatgaggaagaaagcttgagaggaaccagactcaaaggggaaggggaacccatcttcatcaTCCTGGGTGacgcaattataaataattctcttctataactgtgtactacatggacataTGGACATAAGacttcacatgaagtctggtttgctgaacctatccactgtccactgatggagacctgagtgcaaaactgctcacagcaaccgcagccccaaagccaccacagcaatcacagtcccaagccatcacagtacaactgcccattTGAACCGCGgtccagaagtagggcatcaggatggatcaggcaggtcctgaAAGCAAAAGGtttcaggatcactggtatctcaggagtagcatgtgtagctcgacatagggagagagagacagagggaaagagagggagagattgttaggtatgctttttgtcccataatggttaaggacaatgtactttgcatgcagagtgtaAGCAGGGACtacagcaagactagctatggcagcataactaaaagggagagccagaaggtaacacagacatgagggcacccggGGACATAAAGCGGGCaaccactccaccatcaacaaacctgagtgaacgtgagGGGTGGGGGTACAGCATCCAGCATCCAGGGGGACAGCATCCAGTCCAGAAATGTATTACAGTCCTCATCTGTAACTCATATTGAGACAAATGGCTGATCATTTAGAATTTGCCCCCCGAACATCAGAAATTCATGAAATTTGGCAATTTTCTGAGACTGTCCTGTTATCCATGTGTACCAAGTTTCATAAAGTTTGGACATTGCATTCACAAGATATAAGCCAATTAGTTATTATATATCACACCTACAAATATATGGGCCTATATATCTGGAGTATCTCGAGATGGTGCATACCTAATTTTATGtgaatcagacaaaaaaaagagttctAAGTCTTTAGTAAgacattttgatttgacgtTATTAGCTGCTGAATGTTGATTGGCTGCTGCTGTTGATTTGTCCAAatcatatttaatgaaatttgaaaaaaaaaaaaaaaaaaaaaaacaattacctTTATAGTAAGTTTAAAAGTAGtaattttttgttattcatATGCACCTGCATTCACCAGTTTGCCAAAAGCACCATAATGTTAATATCACCATAAATTATAGAGAGAGTGTTGAATGTGATGCTCGCTCTgctattttaccattttaccaTTTTTGCCATGTGCCAGGATCTTTGTGCTGCAATCCGTTGGGGAAACTCAGCCCTGGTCATTTAATAATAGAAGACCTCCATCTGGTCAATATCAGTAAGAGCATTTGTGTTTCATCAGGAGTGTTTTCCCATATGAACATGTTTATTACAGAGAAATAAACCAAGGGAAGTCCACAGTTTCTTCACTGAACATATACACAGTCcactctgaaagtattggaacagcaaagccagttctgttgtttttgctatacactgaagacatttggatttgagattaaacgatgaatatgagatgaaacatcacaatttcagctttcatttcctgatacttACATCTAGATGCGTTGAACATCTTAATACACCACCTCTGATGGCAGACCACCCAGTGTTTATGTGAGCAAAAGTAAgcagtcttaaagtaaataaaagtaaataacacttaccATTTGGTTGCATATCGTTAGCTAGGCTACGACGCgcgttatttattcatttatttttgttttatatgtttgttttttgtttgttttcgtTTTGTTTTAATGTCTTTTGCAATTAGCTGCATGTTCTGTCGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395207 lncRNA downstream 357487 17541846 ~ 17542352 (-) True G333700
TU395151 lncRNA downstream 509726 17389862 ~ 17390113 (-) True G333657
TU395150 lncRNA downstream 510098 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 514193 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 515816 17383742 ~ 17384023 (-) True G333652
TU395481 lncRNA upstream 250 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 3525 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 22108 17924491 ~ 17924789 (-) True G333971
TU395616 lncRNA upstream 126192 18028575 ~ 18028834 (-) True G334038
TU395628 lncRNA upstream 176770 18079153 ~ 18079979 (-) True G334050
XM_026938264.2 mRNA downstream 161 17890350 ~ 17899678 (-) False LOC113541342
XM_026938263.2 mRNA downstream 163 17890350 ~ 17899676 (-) True LOC113541342
XM_026938101.2 mRNA downstream 10077 17885548 ~ 17889762 (-) True abhd10b
XM_026938100.2 mRNA downstream 16506 17880010 ~ 17883333 (-) True tagln3b
XM_026937912.2 mRNA downstream 20642 17876714 ~ 17879197 (-) True c1qtnf9
XM_026937923.2 mRNA upstream 5201 17907584 ~ 17908742 (-) True LOC113541127
XM_026938079.2 mRNA upstream 6941 17909324 ~ 17916556 (-) True c22h11orf65
XM_026938077.2 mRNA upstream 13701 17916084 ~ 17931814 (-) True zmp:0000000991
XM_026937815.2 mRNA upstream 81661 17984044 ~ 17995146 (-) True zgc:112982
XM_026938207.2 mRNA upstream 95284 17997667 ~ 18019023 (-) False map7d2b
XR_004576994.1 other downstream 660733 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 760154 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 1019955 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 1019956 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2834029 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 5511 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 7555 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 22692 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 476653 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 477266 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile