RNA id: TU395485


Basic Information

Item Value
RNA id TU395485
length 316
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G333938
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17907366 ~ 17907681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccttcactggaactaagaggtccaaacctgttccatctgttccacaaagcgagctccatgaacacGTGGTTTTTatcaaggctggagtggaagaactcgagtgtcctgcacagagccctgacctcatccccactgaacacctttgggatgaactggaacaccgactgaaccccagacctcctcaccaacatcagcgcctgatctcactaatgctcttgtagctgaatgaacacaaatccccacagccacgctccaacatctagtggaaagcttcccagaagagtggagcttattataacagcaaagggggaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395484 lncRNA upstream 2141 17904953 ~ 17905225 (+) True G333937
TU395321 lncRNA upstream 56571 17849795 ~ 17850795 (+) True G333801
TU395319 lncRNA upstream 110845 17781820 ~ 17796521 (+) False pan3
TU395317 lncRNA upstream 149437 17757724 ~ 17757929 (+) True G333799
TU395316 lncRNA upstream 150568 17756558 ~ 17756798 (+) True G333798
TU395521 lncRNA downstream 105246 18012927 ~ 18015594 (+) True G333966
TU395506 lncRNA downstream 114058 18021739 ~ 18026962 (+) True G333953
TU395574 lncRNA downstream 136143 18043824 ~ 18045177 (+) True G334005
TU395604 lncRNA downstream 171470 18079151 ~ 18079370 (+) True G334028
TU395608 lncRNA downstream 177638 18085319 ~ 18108804 (+) True G334032
XM_026937954.2 mRNA upstream 124955 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 167781 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 201248 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA upstream 201248 17678898 ~ 17706118 (+) False boc
XM_034298052.1 mRNA upstream 253753 17636755 ~ 17653613 (+) True LOC113541191
XM_026938160.2 mRNA downstream 34747 17942428 ~ 17951626 (+) True chodl
XM_034298173.1 mRNA downstream 53307 17960988 ~ 17963471 (+) True zgc:112408
XM_026938188.2 mRNA downstream 65523 17973204 ~ 17983420 (+) True lipib
XM_026938136.2 mRNA downstream 179966 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 307182 18214863 ~ 18217206 (+) True bhlhe22
TU394792 other upstream 605362 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 605669 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 607355 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 607355 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 612312 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 79081 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 407675 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 407677 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 407679 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 408002 18315683 ~ 18323295 (+) True mtfr1

Expression Profile