RNA id: TU395521


Basic Information

Item Value
RNA id TU395521
length 2668
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G333966
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18012927 ~ 18015594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAAGAAGTTATTATAAGGAAATGCTTTTCAAAAAATCTTAGAGTCAATAGAAGTAatattgtttgattttattatttaatagcgctgttatactgtatacaagTGAAAACCCTTCATGTCTTTGACCCATATATTGTAtctgtaattataatttttCACCATCACCATCCACTGAGTCAGATGAACTAGGGACGACTGTAACTATATCACACactattttctgtttctcttgcTCGTGTGAATGCACTAAAAGCAGCACAGGTTTCAGATATGGATTTATTCTGATGCCACTGCAGAGGAAGTGAAATCAATGTGAAGGCAGCGCACTGGCCAACAACAGAGTCATCTAAAGGAAgactttacacacacagcattaaaacCCCGACCTGGAGCAAACACATCAATCCAACATCAATCCAACATCAACTCAACAGCACAGACGGACAGTTTCAGTTGCACTGGTTAAAGATGGGATGACACAGAGCGGAGCAGCCCGAGCCTTTCTTGTAAAataacatctttatttattacctTTAGAAATTCCTCATTGCACTAAATCATAAATGATGCTGAGTGCTAATTGTGATTTATGCACCTGTCAGCGTGCGATGGATATCGGGAACGGTGAGGTCATCACGCCATGCCGGAGTGACCGATCGTTAACATGGGGGATGGTCATGCAATGTTTTCAATCAATAAACCAGATGAAATGCAAACCCTTAAGCACCGCCCCGATCTCTAAACTTCCTCTTATAGAATAATAAAGAACTCTTGATAAAAAAGGCACAATATTCAATGATATTTAGCAGCCAGTTAGTGTAATGGACTGATATGATTTGTAAATGGGATGTAGAATGTGTTTGGTTGGTTTGGCTTCTTTTCTAGCATCATACTATAACTTATTGACATCGATGCTCATTGTACTATTTAAAGATGCAGTCTggaatgtttaaaagtgtttctagagCTGTACTAATCATATAACTTCAAAGATATTTTctagaaaatgtgatttgcaataTTTCCCTGATAAGAAcgttctatttttatttttatttcaagatCCTGTAAAaatttctggcccagaaattagctccacccccagcATCTCGGCATTTACTTAAAAGGCATTTTAACAGAGAGGCTGGAGTCAGCTGGAAGCATCTTTAGGCTCTAGCATTGCAGTTCATTCCACACTAACAGGTAAACAATGCTCACTGTGTCACTTGTTATAAACCCGgctatttaaaggtgcagtctctAATGCTTAGAGGTGTTTCTAGATCTGTGCTACTCACACTATTTCAGAGAAATTATGGACAATATATGATTTGCACCATTGTAGTGCAATAGAGCTCTCTGTTTTACTTGATTTTAGGCTTCTCTTTAAAATCTTTCTGGCCCTTTCAATCTTTCAAATAAGCTCCGCCCTGATCTGAAAAAGAGGGGGCAGCTCTGTAGCTTTTACTTAAAAAGCAACTTACTCAAGAGCATAAACTTTTAACAGAGTAGGTCGAGGTTCATTTTGCCCTAAAACGCAAAAGCACTGAGAGATACTAATTGTAGACAATCATTATATCCCtaatatttaaaggtgcagtctgtaatATTTAGAAGTGTTTCAGGACCTGTAgtaatcatattattttaaagataCTATGGACAAAAAATGATTAGCAATATTGCCAAGCAGTAGATCTCTGTAGTTTCttaatttcctgtttatttttcaattattctgGCCCAGAACTGAGCTCCACCCCCAGCCAGAAAAGAGTGGCTCAGCACTGTAGCTTTTACTTACCAGTGTTTTAACAGAACAGATGGAGTCACTCAAGAGCATCATTAGCGTCTAGCATCTCAGTTCATTTTGCATTAATAAGAAAATGTCGCTCATACTATTATTAGTCATATTAGTCATATTAACCCTTTGTAGCAGTACACTGTCCGCCAGTGGAATGGAAATCaacttttcaacattttcaatcagtataaacaaatgaattattttatcactgcaagtctgttataagattagtcaggacactgttgggtttctgtatgtagagtatcatgactctgtgtttagctgctggtgagcagggcgatGGGAGAGCGGAGGGGTGTGAGCCGTCTGCTAGGCACACAATTCACACCTCACCACAgtaacactggtacagagataaaacgaacagcacaactaaagctttctGAGAGCAAAACACCGTacacaactgccacaataaaattataacactTAAACCTACCATTACAAACAGCTCCACCCTGCCTCAACTTGTACCACATGACCCATGAGCCCAAGCTTTAAAGCGGGGATAaggatgagacagacagataggtaAAAGgtaaaatgaagaagaagagcgATGAGAGGACAGTGAGGGACTGACCTTCTCCTCCTCACCACGCTGCCTCCTCTTCTGCTCCACAGCAGCTCGGCGACGCTCCTCTCGCTGCCGCTGCTCCTCCAGACGCCTCCCTCGCTCCTCCACCGAGCGCTCATACTGCTTACGGAAGCGCTGCTCCTTCTCCCACAGCTCCTTCTCCCGTGATGCTGTACACACACGGTCAACGTGGGTAAATAACGAAGTGGACCATCTCTGCATTCCATCAcggtttttcacacacactcatagcaCTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395485 lncRNA upstream 105246 17907366 ~ 17907681 (+) True G333938
TU395484 lncRNA upstream 107702 17904953 ~ 17905225 (+) True G333937
TU395321 lncRNA upstream 162132 17849795 ~ 17850795 (+) True G333801
TU395319 lncRNA upstream 216406 17781820 ~ 17796521 (+) False pan3
TU395317 lncRNA upstream 254998 17757724 ~ 17757929 (+) True G333799
TU395506 lncRNA downstream 6145 18021739 ~ 18026962 (+) True G333953
TU395574 lncRNA downstream 28230 18043824 ~ 18045177 (+) True G334005
TU395604 lncRNA downstream 63557 18079151 ~ 18079370 (+) True G334028
TU395608 lncRNA downstream 69725 18085319 ~ 18108804 (+) True G334032
TU395657 lncRNA downstream 184801 18200395 ~ 18202905 (+) True G334078
XM_026938188.2 mRNA upstream 29507 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 49456 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 61301 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 230516 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 273342 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938136.2 mRNA downstream 72053 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 199269 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 299760 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 357128 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 364697 18380291 ~ 18390865 (+) True trim55b
TU395491 other upstream 19913 17986762 ~ 17993014 (+) True G333943
TU394792 other upstream 710923 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 711230 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 712916 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 712916 17287160 ~ 17300011 (+) False G333388
XR_004576961.1 other downstream 299762 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 299764 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 299766 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 300089 18315683 ~ 18323295 (+) True mtfr1
trnaa-agc_15 other downstream 363708 18379302 ~ 18379374 (+) True trnaa-agc_15

Expression Profile