RNA id: TU395574


Basic Information

Item Value
RNA id TU395574
length 1333
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G334005
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18043824 ~ 18045177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAACGATGAACGGGTGATTCACCTCCACCAGGATGTCTCGCTCCATCTTAGTCCTGACACGATCGCgtactgaaaacacacacacacacacacacacacagctgagctTTTCCACTAAATCACCTCTATATAAATGCACACCCTTCTAGAGCCCTTGCTCTCTGGCAAACGCAGAATAACACAGATGGCACTGGATGACTAATTAaataaaggagagaaaagaacatGCAGAGCAGAGGGAAAGAGTCAGAGAACCGCCGATCCTCTcagagagcacagagaacagTCGGGGTGTAACATATCAGCGGAGAAGCGAGTGTTTTAGATCTTTAAGGTACAGGACTTCGGTACATTTACCGTCAGTAGGTAAAAAAATCACACCGAGCAGATTAAAATGTAGCCATCAGCGCCGCGGCTCACGTGGTGCCTTCGCCTCATTCCCCACCCGCTCACATCCACGGGTAAAAACTACCACCAGATCAAAGGGATGTGATTTTTAATGTCAATTTGAATTTCTTAATCAATAAGAAATCTTCATTACCTTGTACAGATATACCTCAGTTTTTACTCGATATCCATTAGAGATGTTGTACTTGCGTTCATACTCAAAAGAACGACATCAAAATTTCCGGTAAGGCTTGACAAGACTAACTAACGTTATTCAGCTGGTTCTCGACCTTCTGAGACCTCGGAGACACATGGAGCTCCGTGGACAGATCATAAACTCACTCCGCGAGCCTTGAGCAGCGCTCGTGGATCATAAGAGGATAGAAgtatgtgctgtttttttaaatcccactccTTCCTGTTGTCGAAAgaatttctgaccaatcccgcctGCTGCTGCAGTTATTTTTGCTCGCACCCGCCAACAATGTTTTCTAACGAACTTAGATGCTTCTCTTTcctaaaaatagaaaaaaaaggtcatttcaACCACAGCGAATCTGATCAGAAGTTAAAGCACCCTTCGACCACACAGTACGTCAGTACAGTAATGGTGTCATTACTGTTCACGCATCCTCACTGTGGAACTAGCCTCTTGTAGCTGTGTGACGATGTAATAGCAATGTCGTGATAAATTTTGTCgattttctgagatatcgtgatagatttttattacatttggaATTTTTTAGAAATGATTGCAAGCTGACTAGAAGCAGCTGAtgttcaaataataataataataataactttttcagtgtcaatttttaaaaaaataaaatagtcatttctgaaatatatcaaaattaataaaatttttatattacttattatttatgtatgtatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395506 lncRNA upstream 16862 18021739 ~ 18026962 (+) True G333953
TU395521 lncRNA upstream 28230 18012927 ~ 18015594 (+) True G333966
TU395485 lncRNA upstream 136143 17907366 ~ 17907681 (+) True G333938
TU395484 lncRNA upstream 138599 17904953 ~ 17905225 (+) True G333937
TU395321 lncRNA upstream 193029 17849795 ~ 17850795 (+) True G333801
TU395604 lncRNA downstream 33974 18079151 ~ 18079370 (+) True G334028
TU395608 lncRNA downstream 40142 18085319 ~ 18108804 (+) True G334032
TU395657 lncRNA downstream 155218 18200395 ~ 18202905 (+) True G334078
TU395656 lncRNA downstream 157886 18203063 ~ 18203680 (+) True G334077
TU395716 lncRNA downstream 251466 18296643 ~ 18324885 (+) True G334120
XM_026938188.2 mRNA upstream 60404 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 80353 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 92198 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 261413 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 304239 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938136.2 mRNA downstream 42470 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 169686 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 270177 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 327545 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 335114 18380291 ~ 18390865 (+) True trim55b
TU395491 other upstream 50810 17986762 ~ 17993014 (+) True G333943
TU394795 other upstream 742127 17292031 ~ 17301697 (+) False G333388
TU394801 other upstream 743813 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 748770 17287160 ~ 17295054 (+) False G333388
XR_004576961.1 other downstream 270179 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 270181 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 270183 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 270506 18315683 ~ 18323295 (+) True mtfr1
trnaa-agc_15 other downstream 334125 18379302 ~ 18379374 (+) True trnaa-agc_15

Expression Profile