RNA id: TU395604


Basic Information

Item Value
RNA id TU395604
length 220
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G334028
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18079151 ~ 18079370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCACTGGTAACTAGTTACAGCTCAGTATCAGGGTTTGTAGTAGATCACAATATCTGCTTAGAATTAACTGAAGTATTAAGTGAATTAAGTATtagtattaaatgaaaaaaatttggGAAAATTTATAGAAGATACCGTGAGAATCAGTGTTAAGCTCCATACCtagaaataactttttttttgcttgaatgaagcttgtttttgtatttcagaTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395574 lncRNA upstream 33974 18043824 ~ 18045177 (+) True G334005
TU395506 lncRNA upstream 52189 18021739 ~ 18026962 (+) True G333953
TU395521 lncRNA upstream 63557 18012927 ~ 18015594 (+) True G333966
TU395485 lncRNA upstream 171470 17907366 ~ 17907681 (+) True G333938
TU395484 lncRNA upstream 173926 17904953 ~ 17905225 (+) True G333937
TU395608 lncRNA downstream 5949 18085319 ~ 18108804 (+) True G334032
TU395657 lncRNA downstream 121025 18200395 ~ 18202905 (+) True G334078
TU395656 lncRNA downstream 123693 18203063 ~ 18203680 (+) True G334077
TU395716 lncRNA downstream 217273 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA downstream 223492 18302862 ~ 18324824 (+) False G334120
XM_026938188.2 mRNA upstream 95731 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 115680 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 127525 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 296740 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 339566 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938136.2 mRNA downstream 8277 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 135493 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 235984 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 293352 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 300921 18380291 ~ 18390865 (+) True trim55b
TU395491 other upstream 86137 17986762 ~ 17993014 (+) True G333943
TU394795 other upstream 777454 17292031 ~ 17301697 (+) False G333388
TU394801 other upstream 779140 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 784097 17287160 ~ 17295054 (+) False G333388
XR_004576961.1 other downstream 235986 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 235988 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 235990 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 236313 18315683 ~ 18323295 (+) True mtfr1
trnaa-agc_15 other downstream 299932 18379302 ~ 18379374 (+) True trnaa-agc_15

Expression Profile