RNA id: TU395608


Basic Information

Item Value
RNA id TU395608
length 1259
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G334032
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18085319 ~ 18108804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATCAGGGAAAAGCCACAAAGCTTCATGAAGCTTCATCCACCCTTCCCATATATCACTCCTTACAAAGCTGAGCAAAGACTCATGGGTGAGAATCAAAGATTTTATGAGATAAGACAAAATAATCAAGATTTAGTTCACCAAGAATCATGAACCCACCTTGATGTCAAAGGTGGCCTGAGGTGTGAAGTTGGCATAGGAGCGGCTCACGAGTACCACTGCGGACAGTTGTTCCTTGCTGCACCTCTGAGCGCGATTGAAATAAAAGGCAACATGTTTTGCATAGTTTACAGCCAACGCTAAAAGGTTAGCTTCTTCTGTTTACCCGCACTTCCtggtcttcttcttcttctgcggTGaggagaaagaggagtcTGACAGGGAAAGCAGAGATAACACacagtataattatatattgtgAGCCATGTGTGTCCTTTTTCCTGACTTTGCATCGGCTCTCCGGCGCTGAGAGGTTAACGACAGTCCTTCACCGTCCTTGTCAGACATGTATGAATGCAGTGCttttgctggtgtgtgtgtgtgtgtgtgtgtggcagtcgGGCAGATGGTCACTGTGTGAATAACGATTGTCAGACTCTGGCAGGTCCCTCAGTGATGTAGCGGGGCAGGAGGTAGACACAGGGCTGATGGGTAAATCAGCCACTGAATACTAACACCAGCCTTctggaaacacaaacacacacacacacacacactgtaaaggCAAAGTCCATGATTTTAGAAGATGTAAGAAGAGTGAGGTGAGTTTTTAAAACACTCTCTTTAGTGTCCACTtcaaagccacacccactcTGCTAGTACAAGAGGTGGAGTTTTTTGATTGACAGCCACCCACTTGTCCCGCCTGCTTGGTTGAATGCTGGTGTTTCACATCCTGCTTTTGTTTCTGTCGTTTTCAGAACCTGGGTCGCTGGGTACAGGATGGAAGCTTGTTTCTGATGCTTTAATGAAATACATTTGTAAAGATTTCTTGTcattatattcaatattcacTGATCTTTCACAGAACCTATTTAACCCCTTATGTCCTGGTGAATTTTGTGCATGTCCTCCTGAATAAATGCAAAAGAATgtagtgtattttttaaatcatgaaaaTATAGTActgttacaaataaaaacacaaaagcagtcACTTTTCAGTTGGAGTTCAAAATAATGACTTGagttcaaaataataaacagagacTAGaatcattaaaagaaaaagaaacatgaatCAGAGGCTTGATATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395604 lncRNA upstream 5949 18079151 ~ 18079370 (+) True G334028
TU395574 lncRNA upstream 40142 18043824 ~ 18045177 (+) True G334005
TU395506 lncRNA upstream 58357 18021739 ~ 18026962 (+) True G333953
TU395521 lncRNA upstream 69725 18012927 ~ 18015594 (+) True G333966
TU395485 lncRNA upstream 177638 17907366 ~ 17907681 (+) True G333938
TU395657 lncRNA downstream 91591 18200395 ~ 18202905 (+) True G334078
TU395656 lncRNA downstream 94259 18203063 ~ 18203680 (+) True G334077
TU395716 lncRNA downstream 187839 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA downstream 194058 18302862 ~ 18324824 (+) False G334120
TU395829 lncRNA downstream 326917 18435721 ~ 18437406 (+) True G334209
XM_026938188.2 mRNA upstream 101899 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 121848 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 133693 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 302908 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 345734 17727853 ~ 17739585 (+) True atp6v1ab
XM_026937924.2 mRNA downstream 106059 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 206550 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 263918 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 271487 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA downstream 271641 18380445 ~ 18390865 (+) False trim55b
TU395491 other upstream 92305 17986762 ~ 17993014 (+) True G333943
TU394795 other upstream 783622 17292031 ~ 17301697 (+) False G333388
TU394801 other upstream 785308 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 790265 17287160 ~ 17295054 (+) False G333388
XR_004576961.1 other downstream 206552 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 206554 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 206556 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 206879 18315683 ~ 18323295 (+) True mtfr1
trnaa-agc_15 other downstream 270498 18379302 ~ 18379374 (+) True trnaa-agc_15

Expression Profile