RNA id: TU395616


Basic Information

Item Value
RNA id TU395616
length 260
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G334038
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18028575 ~ 18028834 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGCTCTTCTTCACGTGGAGTCTGTCAGGCATTGTCAGGAGGGGACCTCGTGTAGTTTTTTCAGTACTGGAACTCACAGTCCACCTTTATCAAAGCTACTATATCTTTCTCACAGTTAGAAACCTGTTCTTGTCATTTGAATTGAACGTGTTTATTCCAAACATCACTAACTCCGAAAAAATAAGCTTATAAGTCATTTAAATTGGGATGTAATATGTTATGTCGGTGGAAAACTCAGGAATGAAAAAAGCTCCAata

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395528 lncRNA downstream 103786 17924491 ~ 17924789 (-) True G333971
TU395486 lncRNA downstream 121769 17905908 ~ 17906806 (-) True G333939
TU395481 lncRNA downstream 125720 17902633 ~ 17902855 (-) True G333934
TU395479 lncRNA downstream 126192 17899839 ~ 17902383 (-) True G333932
TU395207 lncRNA downstream 486223 17541846 ~ 17542352 (-) True G333700
TU395628 lncRNA upstream 50319 18079153 ~ 18079979 (-) True G334050
TU395620 lncRNA upstream 65669 18094503 ~ 18099286 (-) True G334042
XR_003404169.2 lncRNA upstream 78863 18107697 ~ 18109070 (-) True LOC113541306
TU395659 lncRNA upstream 112594 18141428 ~ 18202900 (-) True G334079
TU395660 lncRNA upstream 174237 18203071 ~ 18204225 (-) True G334080
XM_026937803.2 mRNA downstream 1627 18021664 ~ 18026948 (-) True eif1axb
XM_026938207.2 mRNA downstream 9552 17997667 ~ 18019023 (-) False map7d2b
XM_026938208.2 mRNA downstream 9553 17997667 ~ 18019022 (-) False map7d2b
XM_026938209.2 mRNA downstream 16165 17997667 ~ 18012410 (-) True map7d2b
XM_026937815.2 mRNA downstream 33429 17984044 ~ 17995146 (-) True zgc:112982
XM_026937833.2 mRNA upstream 680 18029514 ~ 18077339 (-) True rps6ka3b
XM_026937834.2 mRNA upstream 680 18029514 ~ 18062080 (-) False rps6ka3b
XM_026937832.2 mRNA upstream 680 18029514 ~ 18056615 (-) False rps6ka3b
XM_026937831.2 mRNA upstream 680 18029514 ~ 18056604 (-) False rps6ka3b
XM_026937835.2 mRNA upstream 680 18029514 ~ 18049776 (-) False rps6ka3b
TU395529 other downstream 101740 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 112019 17909938 ~ 17916556 (-) False c22h11orf65
TU395488 other downstream 119763 17907894 ~ 17908812 (-) False LOC113541127
XR_004576994.1 other downstream 789469 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 888890 17116098 ~ 17139685 (-) False zbtb47b
trnay-gua_3 other upstream 350202 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 350815 18379649 ~ 18379734 (-) True trnay-gua_4
TU395863 other upstream 413521 18442355 ~ 18442995 (-) False mybl1
TU395862 other upstream 415824 18444658 ~ 18520205 (-) False mybl1
TU396861 other upstream 1547274 19576108 ~ 19578920 (-) False nup58

Expression Profile