RNA id: TU395829


Basic Information

Item Value
RNA id TU395829
length 1686
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G334209
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18435721 ~ 18437406 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccccctcaataCGTACAAGGGTCACAAATGGGTACTGGCAGGATTCAGAGAGGCAGGCGATATATGTTCAGCAAAATAGTGTTGGAAGTAAAATGTCTTGCTTGTGAAAATGTGTATAGATAATGTCAGATAAGCTGAATGTACTGTTTGTCATGCATTGTTTTTAAACTGCTACATATATCTACTTTCCTTCAGAATCTACGATTAGGTGGTTGAGTGTTAAATAGAATTTTATACACATAAACTTGCACCTACATTAAAAACAAGACACACATGCCTCACAACTCTGTTGTTACCTGCACTGTTACATTAAACAATATTGAATCTTATGCTATGAAATGTGGTGAATAACCTAATGAACTCTGGGAtttgcaaatacattttttgtagaattaaaatgaaaaaaaaaaaaaaaatgctacccATAGGACAGGATGTCTTAGTGTTGGACTAACCAACTGATTTATAAAAAGCTCTCGGCATATCACAGAGGCttgttttaattataatgcCTTAATGTAGACCCTTTAAAAACCTACTGAATAATTTCACATTGACCAGTATAACACACCGACACTGACTTGAAAAACGCTCTACTGTAAAAATTTCAATTACCTTCAAGTTAGATTTAAGCAGTACAACTGTTCTACATCTCCAAAGGATTGTGCTTGTGTTTCGTTCAGTTCTTTTCTGATTCTCAGCTACAGCACAGCCTTCAATTTCACCTGCAGAATtactcagtgagagagaggaactCTTATTTGAGTCCATttaacagtcagtgtttcatttgtacaagaaagaaaaatcagccACTTCAATCACCATCACAAAAAGACTCAAAATGTAAACACTTtaggggattaaaaaaaaaaaaaaaaaacactatcaAAAAACAGACACTCgaacaacatttaaaaagtgcaatttGCCTACACAAGCAGTTGGAAGCTGAATGTTGCTACCTGTATTGTAATTAAACTTGTTTGAACTCACACAGAACTTTGGAGGTGACTAGATTGATGCTAGATTGAAACCAATTAGTAAAGAATGATTAGTGGCAGTGTATGTTGTTAAaaattttagaaatgtttctgatggaaGGTAGCCAAATATTGTTTCTTAacacaacagaaataaaattctcTTTATagctttgaaataaataaattagtaaagaTTTAATAAATAGAACCTACAGCCCTAAGTGATGGAGAAATCCATCTCGTCTTGGAACGTGTTACTTGTGTGAGACTGCATATTAAATATCAGTACCAAACATGACTTCTGATAGTTTGAAACCTAAAGCAGCTAGGATGCAAGTTGCTGGTTTTGTTTTTAGGCTGCAGTCACTGCCGTGTCCGTCAGCGAAAGGTAGGTCTGTTTCAAAACGGGACAGACCAGGTGCTCAATAAACATCTCAACAACTCGAATTACAGCAACGAATAAAttagaaaatcaaaaacaaacgaaaaaaaaaagaggtaccCTTCCATTCGACGCTACTTTAGCAGTTAAATGCTGTACAATACATTCAGTGAGTGTCAAACTCAGCAAAAACACGGAGCAGAACCCTTATTATGGTTCGAGCCAAAACAGTCACATTGCAAGTGCTATCCAGTTCCTCCTAAACATGCTTCAAGCCCCTCCCCTTTACAGTTACCCACAATCAGTAGTGCAACACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395716 lncRNA upstream 110836 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA upstream 110897 18302862 ~ 18324824 (+) False G334120
TU395656 lncRNA upstream 232041 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 232816 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 326917 18085319 ~ 18108804 (+) True G334032
TU395830 lncRNA downstream 1743 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 2849 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 37278 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 63377 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA downstream 64102 18501508 ~ 18530907 (+) False G334219
XM_034298263.1 mRNA upstream 3571 18396227 ~ 18432150 (+) True si:dkey-97a13.12
XM_026937814.2 mRNA upstream 3571 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026937813.2 mRNA upstream 12161 18420986 ~ 18423560 (+) True rrs1
XM_026938222.2 mRNA upstream 44856 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA upstream 44856 18380445 ~ 18390865 (+) False trim55b
XM_026938083.2 mRNA downstream 15701 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA downstream 15980 18453386 ~ 18467245 (+) False sgk3
XM_026938085.2 mRNA downstream 17183 18454589 ~ 18467245 (+) False sgk3
XM_034298210.1 mRNA downstream 30472 18467878 ~ 18474659 (+) False mcmdc2
XM_034298211.1 mRNA downstream 30616 18468022 ~ 18486009 (+) True mcmdc2
trnaa-agc_16 other upstream 55707 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 56347 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576961.1 other upstream 112426 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other upstream 112426 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other upstream 112426 18315360 ~ 18323295 (+) False mtfr1
TU396015 other downstream 255743 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 901800 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 901800 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 901800 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 901800 19339206 ~ 19360737 (+) False dap

Expression Profile