RNA id: XM_034298209.1


Basic Information

Item Value
RNA id XM_034298209.1
length 2144
RNA type mRNA
GC content 0.46
exon number 14
gene id mcmdc2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18467878 ~ 18486009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTCACTGATGAACACAATATGGAGGAGCTTCTGTCTCTGAAAGAGTCGATAGTTACATACTTGGACAGAAGTGGAGGCCTGAATAAACTTGTTGAAGCCTGCCAGTCTCTTAAAGGGAAGCTGaatcCCAGCAGGTGTATCGTTTCAGTTTTGACGTGAATCCCTCTGATATAGTTGAACTGGATGCCAGACTCGGAGACTGCATATTACACGACCCCCTGAAAGCCACTTCGCTCTTTCAGTCTGTTTGTTTTCTCTCAATAAAGACACTGTCACTAATtgagcacatacacacagagaaccAGGTTAATGTTGTTCTACGGCCAACACACATGCCACCATTTCCCAACTACTTTCTGGACTTATCCGAGTTCCCTCGTGGCTATTATCTGATGAGGCCTGTAACATTGGAGGGCCTTGTGATTGCCATGACTTGTGTGACAAAATACACTCAAGGAGCCAGATTCATCTGTGTAGAAGAAAAATGTCCTTGCTCCAGAGGTTTCCACCATATTAGAGTACATGCACCAGGAGCTACGGAGTCAGCTACTGTCCGGAGCGACTTCATCTGCTTCCTTTGCTCCTCGCCACTCAAAGAGGATGTGAAATCTCGTGTTTTAGGGAATAAGCAGCTGGTTGAGCTTGTACACGAGAGAGCACTGGGTGTGTTAGGAGGCCATGAACCCTCCTCCCTGAGATATCAATCTGTCACTCTATTTTTAAGAGATGAACTGTGTAACACTATGAAAATTGGCCAGCTCTACCGAGTAGTAGGAATACCAGCACATGTACACCAGTGGTCCAGTATTACTTGGACCATAGAGGCTTGCAGCATTCAAAATCTCATGCCTGAATATCCGTCCCGTGTAAGCAACAATTTCCAGGCCCTGCATACTGCCTCAGCCACTTCCCCATGGAGATTCTCTGCCATTGTTGCTAACTCATTTGGCTCTCCAGTAGTCCCGCCTGGCCTGTACAGCACACTGAAACTGGCGCTGCTTCTTAGCCTTGTGCAGACCAAAGAGGAGAACTTAGATGCACACAATCATTTGGATGTGCTCGCACTCACCGGCGATACTCTTAATGTTGAGAGGTTAATGACGTACAGTCTGGGCCTGGCAGCACGGGGTATTCGCCACCCGGTTACTGGAGAACTGTTCGCCTCCTTGTCCAGGGATGAGCATGGAGCAGGAACAGCCAACATCCATGCAGGCTCTGCTCTCCTGGCTGCTGGGGGTGTGTGCCTACTAGGGGACTTAACGTGCTACAAGAAAGACAGGATAGACACCCTCCAGTCAGCATTAGATAACAGAGCAGTCTCTGTGTTTATCCCTGGAAAGAAATATGGTGAAGATGCTGACCAGCTTCTTTCTTTCCCCATCAACTGCAACTTTTGGGCCCTGGCTGATGCATTAACTTCTTCTAAAAAAGCTAACAGGCCAGACAGTGTACTGCTGGGCTCAGTGGAGATCGGTCCAGTACCCCCACAAGTTGTAGACACATTTGGGCTTGTCATCCAGTGTCGAGAGCCAGGAGGTAACCACCCAGTCCTTCCTATGACAGTACACACCCTGAGGCAGGCCATTTCACCAGGAGAGCCCATTTACCCTGCCTGCATGCAGTTTACCACACAGGACTACAAAGAGCTCCTGGCTTATGCTCGGAGTCTAAAAGTAGACATGAGTGCTGAGGCTGAGAAGATGATCCATGGTTACTACATGGCCAGTCGGAGAGTGCGCTCCTCAGTATCTGTCACATCCATTAAACTGCTGATAGCCCTTGCACAGGCTCATGCCAAGCTTAATCTGAGGACTCTTGTTCTGGAAGAGGATGCAGTAATTGCAGTGTTGCTGTGTGAGAACTCAATTACCCTAAGACATGGTGAGAGCTTTAAAAGTGAACCTTTTAAGATTAGCCATTTCCTACCGCAAACTACATAGATTAATAGTGCAATGTCTGACAGAATTAATATGCTCTTTCAAGTTAGTTTTAAACCAGTTTAAATAATTTAGGACTtgtatgttatattttaaagaacCTTCAACATAAAGCTTCATATTCAGTGAGGGATATACCATTAGCATGAAAAGTACATTGCAGCAACAAtgaggaagaaataaaaaggacAAACTCAGACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395831 lncRNA upstream 27370 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 28580 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 30620 18435721 ~ 18437406 (+) True G334209
TU395716 lncRNA upstream 143141 18296643 ~ 18324885 (+) True G334120
TU395842 lncRNA downstream 25 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 26124 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA downstream 26849 18501508 ~ 18530907 (+) False G334219
TU395933 lncRNA downstream 68703 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 68731 18543390 ~ 18681823 (+) False LOC113541128
XM_026938083.2 mRNA upstream 781 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA upstream 781 18453386 ~ 18467245 (+) False sgk3
XM_026938085.2 mRNA upstream 781 18454589 ~ 18467245 (+) False sgk3
XM_026937814.2 mRNA upstream 35876 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026938095.2 mRNA downstream 29159 18503818 ~ 18523294 (+) True pign
XM_034298018.1 mRNA downstream 48495 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA downstream 48620 18523279 ~ 18527695 (+) True LOC113541230
XM_026938176.2 mRNA downstream 55816 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA downstream 59619 18534278 ~ 18542760 (+) False hnf4g
trnaa-agc_16 other upstream 88012 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 88652 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 144731 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 218490 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 864547 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 864547 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 864547 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 864547 19339206 ~ 19360737 (+) False dap

Expression Profile