RNA id: XM_034298211.1


Basic Information

Item Value
RNA id XM_034298211.1
length 2805
RNA type mRNA
GC content 0.48
exon number 16
gene id mcmdc2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18467878 ~ 18486009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGCTTTTCACTGATGAACACAATATGGAGGAGCTTCTGTCTCTGAAAGAGTCGATAGTTACATACTTGGACAGAAGTGGAGGCCTGAATAAACTTGTTGAAGCCTGCCAGTCTCTTAAAGaatcCCAGCAGGTGTATCGTTTCAGTTTTGACGTGAATCCCTCTGATATAGTTGAACTGGATGCCAGACTCGGAGACTGCATATTACACGACCCCCTGAAAGCCACTTCGCTCTTTCAGTCTGTTTGTTTTCTCTCAATAAAGACACTGTCACTAATtgagcacatacacacagagaaccAGGTTAATGTTGTTCTACGGCCAACACACATGCCACCATTTCCCAACTACTTTCTGGACTTATCCGAGTTCCCTCGTGGCTATTATCTGATGAGGCCTGTAACATTGGAGGGCCTTGTGATTGCCATGACTTGTGTGACAAAATACACTCAAGGAGCCAGATTCATCTGTGTAGAAGAAAAATGTCCTTGCTCCAGAGGTTTCCACCATATTAGAGTACATGCACCAGGAGCTACGGAGTCAGCTACTGTCCGGAGCGACTTCATCTGCTTCCTTTGCTCCTCGCCACTCAAAGAGGATGTGAAATCTCGTGTTTTAGGGAATAAGCAGCTGGTTGAGCTTGTACACGAGAGAGCACTGGGTGTGTTAGGAGGCCATGAACCCTCCTCCCTGAGATATCAATCTGTCACTCTATTTTTAAGAGATGAACTGTGTAACACTATGAAAATTGGCCAGCTCTACCGAGTAGTAGGAATACCAGCACATGTACACCAGTGGTCCAGTATTACTTGGACCATAGAGGCTTGCAGCATTCAAAATCTCATGCCTGAATATCCGTCCCGTGTAAGCAACAATTTCCAGGCCCTGCATACTGCCTCAGCCACTTCCCCATGGAGATTCTCTGCCATTGTTGCTAACTCATTTGGCTCTCCAGTAGTCCCGCCTGGCCTGTACAGCACACTGAAACTGGCGCTGCTTCTTAGCCTTGTGCAGACCAAAGAGGAGAACTTAGATGCACACAATCATTTGGATGTGCTCGCACTCACCGGCGATACTCTTAATGTTGAGAGGTTAATGACGTACAGTCTGGGCCTGGCAGCACGGGGTATTCGCCACCCGGTTACTGGAGAACTGTTCGCCTCCTTGTCCAGGGATGAGCATGGAGCAGGAACAGCCAACATCCATGCAGGCTCTGCTCTCCTGGCTGCTGGGGGTGTGTGCCTACTAGGGGACTTAACGTGCTACAAGAAAGACAGGATAGACACCCTCCAGTCAGCATTAGATAACAGAGCAGTCTCTGTGTTTATCCCTGGAAAGAAATATGGTGAAGATGCTGACCAGCTTCTTTCTTTCCCCATCAACTGCAACTTTTGGGCCCTGGCTGATGCATTAACTTCTTCTAAAAAAGCTAACAGGCCAGACAGTGTACTGCTGGGCTCAGTGGAGATCGGTCCAGTACCCCCACAAGTTGTAGACACATTTGGGCTTGTCATCCAGTGTCGAGAGCCAGGAGGTAACCACCCAGTCCTTCCTATGACAGTACACACCCTGAGGCAGGCCATTTCACCAGGAGAGCCCATTTACCCTGCCTGCATGCAGTTTACCACACAGGACTACAAAGAGCTCCTGGCTTATGCTCGGAGTCTAAAAGTAGACATGAGTGCTGAGGCTGAGAAGATGATCCATGGTTACTACATGGCCAGTCGGAGAGTGCGCTCCTCAGTATCTGTCACATCCATTAAACTGCTGATAGCCCTTGCACAGGCTCATGCCAAGCTTAATCTGAGGACTCTTGTTCTGGAAGAGGATGCAGTAATTGCAGTGTTGCTGTGTGAGAACTCAATTACCCTAAGACATGGGGCCTCAGCGCTTGTTATTCCCCCTGATGCGGTGTTTCCCTGTGATCTGCGTGACCTGGAGTCCCTGCACAGACGAGACCTGACCTTGGAAGAGTTCCACCAGCAGATCCTGCAGTTTGTATTCAACTATGCACCAGGAGCTGCTACCTACATCATGGAAGAATAAGGCACATTTAATCTCTGAGtgcaTCAAGTATATTATATGGAACGCTGTTGAATTACCTTGAAGTCTCGATATCACGTCATCATCTGGGTTTCCTGctgaacagagaaaaacacaaattgtttaaaatgtagtgTCTGTCCCTCCACCCCTGAAAAAAACTTACAGTTGAATTGTACTGTCCAATTGGGGTTTGGTTAAGGCCACCACCACCCACACTTACacctcaaataaccactccCTAATTAGCTCTTTTATGTCACAACTATTGACTTTACACTGCTTCAGATAAGCAGCACTGAGGGAACAATCAATAAGTGAACTCAATTCCACTCCAAAACTTGACTGATGAACCAAAGGTTAAAGGGCACGTGTAACACAGCTTGAGAGCACAACATCTCACACGAACACAAAGGTCTTACCACAGCTAGTATAACTCAAGGTCAGGACCTTTACCAAGACCGTAGCCCCTCAGAGAGGACTAACAATTCAGACTTTCCCAACATAGGTCATGTGAAGACCATTCCCTAGCCAATGTGGCCTCACAAGGGACAATAAACCTGGTCACAGCCAGCGGACAGTCCTACCAACAGCAATGCAAAGAGCAAAGGGGCAATTTATCATCCCAAGTGGGACACAACTGCCAACATGATTTATAACTGCTGTAAATTTCTGTCCGCACTGCGCCTGACCTCATTTTCATGGTGGGTCTCCCAAACCAGAGCGGCTTCCTCTTCCCCAGAAAGCCAGCAGAGTTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395831 lncRNA upstream 27366 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 28576 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 30616 18435721 ~ 18437406 (+) True G334209
TU395716 lncRNA upstream 143137 18296643 ~ 18324885 (+) True G334120
TU395840 lncRNA downstream 14774 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA downstream 15499 18501508 ~ 18530907 (+) False G334219
TU395933 lncRNA downstream 57353 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 57381 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA downstream 57381 18543390 ~ 18680498 (+) False LOC113541128
XM_026938083.2 mRNA upstream 777 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA upstream 777 18453386 ~ 18467245 (+) False sgk3
XM_026938085.2 mRNA upstream 777 18454589 ~ 18467245 (+) False sgk3
XM_026937814.2 mRNA upstream 35872 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026938095.2 mRNA downstream 17809 18503818 ~ 18523294 (+) True pign
XM_034298018.1 mRNA downstream 37145 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA downstream 37270 18523279 ~ 18527695 (+) True LOC113541230
XM_026938176.2 mRNA downstream 44466 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA downstream 48269 18534278 ~ 18542760 (+) False hnf4g
trnaa-agc_16 other upstream 88008 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 88648 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 144727 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 207140 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 853197 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 853197 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 853197 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 853197 19339206 ~ 19360737 (+) False dap

Expression Profile