RNA id: TU395890


Basic Information

Item Value
RNA id TU395890
length 580
lncRNA type inter_gene
GC content 0.45
exon number 7
gene id LOC113541286
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18474666 ~ 18478793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCTCTTTGCAGCATGGATCCTACAACGGAGGGTATTTTCAAGGGCCGCGGAGTCGCCAGAGCAGCATGCATTACCATGCTGAATTACACCTATCCAGCAGGAAACCCAGATGATGACGTGATATCGAGACTTCAAGAAATGAACTACTGGAAAGAAGTAACCTGAGCATGGATGTCTCAAGACAAGTAATAGGTTGAGAGTGACAAGCACTTATTTGAATTGGCTGCAGTTTGTGCTGCATCATCAAGAAATGAACACAGATATTACAAACTGAACATGGATGTCTCAGGACATGTGAatttacagagagaaagacatctGTGACCTTGGAGGTAGCAGCTCCTGGTGCATAGTTGAATACAAACTGCAGGATCTGCTGGTGGAACTCTTCCAAGGTCAGGTCTCGTCTGTGCAGGGACTCCAGGTCACGCAGATCACAGGGAAACACCGCATCAGGGGGAATAACAAGCGCTGAGGCCCCTGCATTCCCAAGACAGACTCTCAAGAACATGCTGTAATAAGAGTTTGATCTTGACCCTTAAAATATAGTGAACtaataaatgtgataaaagGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395875 lncRNA downstream 10126 18461956 ~ 18464554 (-) True G334248
TU395876 lncRNA downstream 10126 18461956 ~ 18464554 (-) False G334248
TU395861 lncRNA downstream 38158 18435758 ~ 18436522 (-) True G334235
TU395807 lncRNA downstream 47605 18388853 ~ 18427075 (-) True G334191
TU395695 lncRNA downstream 262551 18211916 ~ 18212129 (-) True G334110
TU396070 lncRNA upstream 103715 18582473 ~ 18583025 (-) True G334425
TU396071 lncRNA upstream 104844 18583602 ~ 18584312 (-) True G334426
TU396072 lncRNA upstream 106005 18584763 ~ 18585235 (-) True G334427
TU396115 lncRNA upstream 270637 18749395 ~ 18749913 (-) True G334470
TU396116 lncRNA upstream 277112 18755870 ~ 18759552 (-) True G334471
XM_034298307.1 mRNA downstream 25453 18437514 ~ 18449227 (-) False mybl1
XM_026938290.2 mRNA downstream 25453 18437514 ~ 18449227 (-) True mybl1
XM_026938226.2 mRNA downstream 81702 18391371 ~ 18392978 (-) True crhb
XM_026938220.2 mRNA downstream 128524 18326095 ~ 18346156 (-) False pde7a
XM_026938173.2 mRNA upstream 921 18479679 ~ 18482400 (-) True LOC113541285
XM_034298212.1 mRNA upstream 4629 18483387 ~ 18490581 (-) False ppp1r42
XM_026938172.2 mRNA upstream 4629 18483387 ~ 18490581 (-) True ppp1r42
XM_026937841.2 mRNA upstream 17405 18496163 ~ 18502082 (-) False cops5
XM_026937840.2 mRNA upstream 17405 18496163 ~ 18502057 (-) True cops5
TU395863 other downstream 31685 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 94946 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 95559 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 547845 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 558124 17909938 ~ 17916556 (-) False c22h11orf65
TU396861 other upstream 1097350 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 1121969 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 1700654 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 1763762 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 1767808 20246566 ~ 20248461 (-) False otos

Expression Profile