RNA id: XR_004576989.1


Basic Information

Item Value
RNA id XR_004576989.1
length 4925
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113541128
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18543362 ~ 18681823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAAGTCTCTACTTGTCTATGGCGCGTGCGTGTTTTGTTTAATTGATTAGCTGAAGCTGATTAACgtcatgaaaaaaatctttcagtgcacattttatggaaaaaacacagacagaaaccgaAGTTTAGCCTCAGTAACTTGTTTATTTACGTTTATCTGTCGGTATTCTACTAAATATCGTCGAATATAGATGCTTttctaaaatgtgaaaattgaaAGTTTTAGCTAACGCCACCTGGTGTACATTAAGGCTTGAGTAACGGTCCGGAAGTCCTCAGGTGTGTCCAGgtgttcagaTGAGTTGAGATCTGATGACCGTGAAGGCCATTCATCAGTGAACCCTCGTGCCCTGGGGCTGGGGGCAGAGTCTTCctgaagagaccacgcccatcaagATAGAAATAATTCATCGTAGAATAAAGTGAAGTAGAGGCAGTGCTTCTGCGGGCAGTGTGTTGGTCTCCAGTTCTTCAGAGACGAGGTTGAACTCCTCTGCACAGCTGACAGATTCAGGAATTGGCTGAGGAGCTGCACTTGTCTGCCGCACAACAACTCTGTCCTCCGATGAATCACGGCTCGCCATAAACCGATGCCTATGGAATGAAGGTTTCATATCAGAGATCTGGGGCCATAAATGTCCTCTCCTGCCCCTGTTCTAGTGTAATCACATGCTGTTGCACAGGCCATGTCCACAGAGCCGGCCCTAAGTGCCTCAAACAGTCTAAAAAACCATCAGGACCGACTTGAAAAAGGAAACCGCCTCTCCACGCAGGGCACTCTGCGAAGGACACGTCGCATACAATCACCTGTGAAGCTGCAGAGATGAGAGAAGATATTTGTGCACTTTTGCATTCTCATGAATCTGTTTACGCGCACGGCACGTTGCGGCATACTGTAAACAACAATGAAGAAACGGCACGGGGTGACAGAAAGATCTAGAGCAATTCATTTCAGAGGAAAACATCCGTCTGTGGCGCAGGAGGCAGCCATTGCTCTTGCTTTTTAATATTACTTTTCTCATCTCGGAGTAGACGTGAGTGATTTCGACCCAGGCTGTGCGGTGATGACTTGCACAAGGAAAGACGAGCATCAAAACCCGTTGGTGTCAGACTAATCCGTTTGAAAGTTGCCTCTGATTGTTTCTGAATTcttaaatttgtaatttattctCATGAAATGTTGTTAGGCAGAGGTCTGGTGTGGGGGCTAAAGCCTGACcttgggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaaatcAGCGGCACCTCGTGGGAGCTGAAGTGACTGACTGCTCCTGGCTGCAGACttgcacacacaccatcattaaTGCGTATTATGATTCCTCCAGTGTCAGTAGAGGAGACAAACAGTCACAGTGTGAATCTTCCCCTCATCCTCGtactctctttcttcctctctctctctctctctctctctctctctctctctctctctctgtctccctctagCCTGCCGAGCCAGCAAAAATGCAACAGAGAATTATTCAGGATTCAGAATTTTTTCTGTCATCTCTGCCATCTACTGATAACAAAGCCACAAGCTAATACGGTTTGATTTGTTTGTCACTCATTTTTCATGTGACCTTTCCCTGGTATCATTAATACAGCTGGGGGGAGGAGTGGAGTGAGATGgcgagatgagaggagagagctGCCAGAGGCTTTAACAAGTACTAGTGGTCAGATATAGCAATTTATGCTTTCATTCAATCCGGCAGCGGCTGGAGGAGAGGGATTGTTATTAAAATCTGAAATTACTGCCTATGACCTGCCACCTGGAATTTGCAGCTGGCCGCTCTGAGATGAGCACCGTGTGGTTAAGCAAATCCCTGCCCAAATTATGGTGTGAATAAAATGCCACACTGGTGTCCTAATCTTCTCCATAGGCGTGTTCCTGCCTAAGAGACTCTTTAGTGCACTATTTAATGCACTAGACACTAAAgaaattaaatctaaatgtgAGTGATAACCTAAATGATCTGATTATGTAAAATAGATTTtgaaaaatcagattttcttttttaatataaaggTTGTGTGCAgtatcatattatttttacGTAAAGTTATGTGTTATATTTTAGGAGATATATTATGAGCTGTATTGAAGCAGtaattaaattgttatttatattatttatagtatgATCAAACAGCGTAAGCTCACTTgtactataaaaatatattatttgtattcacttaaaaatgaaacaaatacatTCCTTACGTGTTAGAGCTaatctataattttgtttattatgcaTTGGAATAATTCTGACTGTTGCAGCTAAAAtattattgaattttattttatacttttatatttttattattgaattattaattattattattattactaaatatgattatttattgtaagcaattttaaaacctttttgtgTTCCTTTATAGAGATTTTGATCAGTGATAGTCATATTTTGAGATTCTCTCCTGATTTTATAATTTGCAGCAATATTTAAGTATTAGCCTGTAATAACCTGAAAGACACAAATGCACTTAACTGAATTTATTTTCCAGCCTCACGTTGTTTGTTTTCTTCCCTCAATTAACGGCTGTCCCTCCTTCTCtcattaacatgattatgagGGACAGAGGCGAGGCCTGTTGGAGACATTTGAGTTTCCATGTAAACATATCAATCTTATGCGCGGAAAGCCCGGGCCTCCTCGCGCTGCTCCTCCCGTGGCGAAAATGGCCTGCTACTACCCATCAGCCCGGCGGTTGCCATGGTGACCAGGGTCAAGAAACCTGCCTCCCTCTACCCTCCCCTTCGCTCACCCAAGGCTTGCTCATGTCACTTGTGAAACtatgaattttatatacaggTCAGGAGATGCATATCAGAGAAATAAGCGGTGAATCGGACCATGATGACAGCCCAGTGCTCAGATGTCCTTGAAATTCACATTtcaatcctctctctctctctctctctctctctctctctctctcacccaaaAATGACTCTTGGATCCTCTTGTTGCTTTTAGGCACAATTAGTATTTTCTGAATGCGTCTGcaagatggacagagagaaagggggaaaaagacagagagacatggggaatgattttacatttttaagtcaagtttttattttctttaaagagGTAATATAATGGTTTGCAGCATTATTACAAGGAGATTTTACTAAGCACTTCAGGATTTCGGTTATTTTAAGTGCGTTGTgccaatagattttttttattcttttattttcataataaaagAAGGCATTGTATGGGTTATAAAGCTTTGACATGTAAAACCTTTTATATGGATCAAATCTTTTTAGTTTCTTTAACTAATggtcttttcttttaaaaccacTCAAAAACCCAAACCTTTCAAAGCCTGTACAGATAATATCTGAATTAGACAACCTGCTGTATTTTACATATGTTCTTGtgataactataactatatgtgtcttaaaatatttattctacATCTCATAAATTTTTAAATCGATTTCTGTATGTGTCACCAGACAAACTGTGATCGTTGATGCCATAAATATTTGGCGTAATGTCATATTAAATTAGCTTAAAATGCTAACAAAGTGTtatctgtaattaaaaatgtagaCAGAATTATTGCCATTATTCATTTATGCAAAGatttgtggtgttgtgtgtgaattatgttatatattatatattcgatattatatatgttatatcgAAGACCATTTAATTGCTGTTAAATCAGAATTCAAATAGCATATTGATCTCACCTCGGACTTGacctttttataaatttttcaCCTGATGAGTAGAAAGGTCTGCtaatcagaaatgttttatctAATGGCATACAAGGATTGTCAGTCATTCTCCCTAGAATGGGGTTTTTATGACAGGCTCCCTATCATCCCTCCTCTTCGACGTTGCCCTTTTCTGACCTTTTGCGGTGCCCAAACGTGTCTGGGTTATATATCTTCTGTCCCGAGTGCAGCCTGGCCTATTAGCTAGTCTCTAAACCTCCAGTGGAGAGGATCAAGCCTAGGCGTTTCTACACTTCATTCATTTTGTTGCTCCCCAGCGATCGGTGGCCCTTGCCTCCAAATCCCTCCTTTATAGTGCACTGAAGTGACAAAGGCAGCCTTGTCTTTCATTTCCTTGATGTTCTTCGTACAGCTCGGTGGCTTTTGTGTCGTATTGATGCAAACATTACCATAAACTGCCACCCAGGGACCAGAAACAATTGACTAACTGTTCCCAAATCCAATACACTTCAGCTGGTCATATGCTAAGTGTAAGTTTAGTTAGGTTGAGTGCTAAAAGCACTGTTTCCTGTCCAGCCTGGACCAGCGCTCAGAGAAGGACGCCCGTGCAGGGACGCCTGTACGCACTGACAAAAGGGAATCAAATTTGTCGCACAGAATCCCTGTCTTCATTTCTGATGACTCAAATCCCCCCCCTCTTTCCaattcctctctctcccctcttcatttctctctctttctgtttcggTGGCTCTCACCTTCTGTTCAGGTTCAACAATAGTGGGATTACACTTTAAAGAAGCTGCGCTTCAGCTGAGAAAGAGGGATTTGGCTGGGATGAGTGTTTAAAATGAACCGCCTTTGAAACCATGGACATTAATTACCGCCCTGGCACAGAGTGACAAATACTTCACTCATTACCAATGGAAATCgtgggaggaaggaaggagggcGGGGATTGTGGGGGAATTTCAAAAAGTTTCTTGTGTTGTAAATGTGAAATGGTGCccgaccttttttttttctctctgctgcttAATGGGAGGGTCATTTGCCTCTCGGAACTTTGGTGGGGATCCCGGAGTCAAGCTTTATAGAGAGGGGCTTTATTCAGTTTCCGATacatggaacaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395840 lncRNA upstream 12483 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA upstream 12483 18501508 ~ 18530907 (+) False G334219
TU395842 lncRNA upstream 64651 18474684 ~ 18478739 (+) False mcmdc2
TU395831 lncRNA upstream 102734 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 103944 18439149 ~ 18439446 (+) True G334210
TU395987 lncRNA downstream 94120 18678875 ~ 18738178 (+) True G334345
TU396013 lncRNA downstream 104004 18688759 ~ 18726730 (+) True G334371
XR_004576991.1 lncRNA downstream 120537 18705292 ~ 18706093 (+) True LOC117595807
TU396027 lncRNA downstream 137661 18722416 ~ 18747477 (+) False LOC117595806
TU396028 lncRNA downstream 158263 18743018 ~ 18747477 (+) True LOC117595806
XM_026938176.2 mRNA upstream 630 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 630 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 1034 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 15695 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 15695 18523279 ~ 18527695 (+) True LOC113541230
XM_034298302.1 mRNA downstream 127293 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA downstream 131555 18716310 ~ 18733080 (+) False LOC117595806
XM_034298300.1 mRNA downstream 131555 18716310 ~ 18733080 (+) False LOC117595806
XM_034298303.1 mRNA downstream 137632 18722387 ~ 18733080 (+) False LOC117595806
XM_034298299.1 mRNA downstream 148205 18732960 ~ 18788585 (+) True zfhx4
trnaa-agc_16 other upstream 163376 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 164016 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 220095 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 108394 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 754451 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 754451 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 754451 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 754451 19339206 ~ 19360737 (+) False dap

Expression Profile