Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576990.1 |
| length | 1042 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 6 |
| gene id | LOC113541128 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 18543362 ~ 18681823 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU395840 | lncRNA | upstream | 12483 | 18500783 ~ 18530907 (+) | True | G334219 |
| TU395839 | lncRNA | upstream | 12483 | 18501508 ~ 18530907 (+) | False | G334219 |
| TU395842 | lncRNA | upstream | 64651 | 18474684 ~ 18478739 (+) | False | mcmdc2 |
| TU395831 | lncRNA | upstream | 102734 | 18440255 ~ 18440656 (+) | True | G334211 |
| TU395830 | lncRNA | upstream | 103944 | 18439149 ~ 18439446 (+) | True | G334210 |
| TU396013 | lncRNA | downstream | 8261 | 18688759 ~ 18726730 (+) | True | G334371 |
| XR_004576991.1 | lncRNA | downstream | 24794 | 18705292 ~ 18706093 (+) | True | LOC117595807 |
| TU396027 | lncRNA | downstream | 41918 | 18722416 ~ 18747477 (+) | False | LOC117595806 |
| TU396028 | lncRNA | downstream | 62520 | 18743018 ~ 18747477 (+) | True | LOC117595806 |
| TU396029 | lncRNA | downstream | 80591 | 18761089 ~ 18854003 (+) | True | G334386 |
| XM_026938176.2 | mRNA | upstream | 630 | 18530475 ~ 18542760 (+) | True | hnf4g |
| XM_026938175.2 | mRNA | upstream | 630 | 18534278 ~ 18542760 (+) | False | hnf4g |
| XM_026938177.2 | mRNA | upstream | 1034 | 18534281 ~ 18542356 (+) | False | hnf4g |
| XM_034298018.1 | mRNA | upstream | 15695 | 18523154 ~ 18527695 (+) | False | LOC113541230 |
| XM_026938096.2 | mRNA | upstream | 15695 | 18523279 ~ 18527695 (+) | True | LOC113541230 |
| XM_034298302.1 | mRNA | downstream | 31550 | 18712048 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298301.1 | mRNA | downstream | 35812 | 18716310 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298300.1 | mRNA | downstream | 35812 | 18716310 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298303.1 | mRNA | downstream | 41889 | 18722387 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298299.1 | mRNA | downstream | 52462 | 18732960 ~ 18788585 (+) | True | zfhx4 |
| trnaa-agc_16 | other | upstream | 163376 | 18379942 ~ 18380014 (+) | True | trnaa-agc_16 |
| trnaa-agc_15 | other | upstream | 164016 | 18379302 ~ 18379374 (+) | True | trnaa-agc_15 |
| XR_004576962.1 | other | upstream | 220095 | 18315358 ~ 18323295 (+) | False | mtfr1 |
| TU396015 | other | downstream | 12651 | 18693149 ~ 18717953 (+) | True | G334373 |
| TU396386 | other | downstream | 658708 | 19339206 ~ 19360737 (+) | False | dap |
| TU396388 | other | downstream | 658708 | 19339206 ~ 19427936 (+) | False | dap |
| TU396389 | other | downstream | 658708 | 19339206 ~ 19360737 (+) | False | dap |
| TU396390 | other | downstream | 658708 | 19339206 ~ 19360737 (+) | False | dap |
