RNA id: TU395987


Basic Information

Item Value
RNA id TU395987
length 2048
lncRNA type read_through
GC content 0.39
exon number 2
gene id G334345
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18678875 ~ 18738178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagagagagagagagagaaagagaagactCACTTTCTTCATGCATTCACTCAGTGTTAGTGATGTGGCGTTAGTAACTGAGCAACAAAGAGCAAATCCTCTGACGAGTGAAGTCAGCATGAGCCAAATGAAGCCCTGAAAGAATCGCATGTGGAATTTTGAGGCCTGGCATTAAAAACCCTGTCCATGGGAATGTTTTGAAATCCTTAGcagtttaaaacttttttttcaccccctctctttttttcataaggGCTGCACTAATTCTCTAAGCAAACAAAAAAGGATTCCATGGCAACAAAGAGCATTGGAGATCATGTAGGAAGACAAGTAGACTGAAGATTAGGAGGTGAGAAAGGCCTAGCTTAGTCATGAGCTCAATAGCATGTGGTTGTTGCTGCATGCATAGACATGGCTGTGGGTGCAGATTGTTTGCACACTTGTGTACATGAGAGTGGGTCACTGCTGGCTTCATggagattttcattttttaaatcgtCGGCatcaaatataattaaataggCGTCACATTACAATTTCACCAATCCTgataacattaaaacacttaTATGTTGTGTCTGGTagtgaaatgtaatttatagtgatgtttttaaaataatgagtcTGAGCATGACGTGGTcagtaatacttttttttttttaacccattccTTTCTACTGACTCAGAATGAAAATAGCAGGTGGCTGTTGTGGGGATTAAAATGGTGCCATTGTTTTGCGTTCACGTGTCGGTAAATCCAGCAGCAGCATGACAAAGCGTACTCTTTCTTTGACATTTGAaagtccaaaaaaaagaaaataatgaagtaATCTAATCAAAGCTTTATTTCAAGAGGAGATGATTCAGGAGAAAGGCCTAGCACAAAAAGGCATGAAAGTGATTTCTAAGTATTTATTCAGCTTTTGTAAATGTACAGAGCGAGAGCAGTGTCCATTCGTCCTGCACTCTTGCctgcctcatttttttttaatgccaggAGGGGGAAATCTGTTTTACAGATGCAGCCTTTAATGTGTTTGGCAGAAATGAGAATATTTCACTCATAGACATATGGTAgtaaagcttaaaaaaatagaGACTTCTTTATTTGACCAGAAAAACACCTCTCTTTTTATGTTTAAAGGTGAAAGGCACATGGGATTGGGTAGTTTGGCCAGGCACACAAAAGAACAAAGCGTTGACGACATTACCACATGGACCTGGAATACTAAATATCTTTATGGCTAAGAAATGACTGAAGATACAAATGAAAAATCCCTGCATATTcagagttttatttttgcttctgCATATTTCCAAAAGGAATCAGTGTCATTTCCACATCAaggaataaaattatattagcagaagatgacattttttcaggtaaatacaacaaacaaaaaggctTTGGATTCTCATAGGCTGTTACACAACGCCATACCCAAAAACGAATGTGTGTTACTGTTTGGATTCAGCctataataatgatatatagtcatgatataattattaataataaacactcaAATAAATGCAGATGTGGGACGGTATAAATCTGTCATGACCATTCAAAGGCAGCGTAACGCTCAGTTAGGAAATGGCAGGAAATGTGTGTTTCTCCAAAGAAAGGATTTGCACTGGGCATTTGGGTCATTTAGAGCCAAGAATGTTCATGGTCAGTGTGTCGGAGTCAGAGTGTGAGCGAGGAAACTCAAATACCAAACCGCACCTGTTCATCAGCtgggcctctctctctccttctaacatatacacacacacacacacacacacacacacactcacaccctctctctttctctttggaTCTTGatgtccagtgtgtgtgcatccaAGTCTGCTAGCCAGGAGTTATGAAGTGTTTGATTACAGCAGTCGCAGCCAATCCGTCATCAGCGAAGCAGAATGCTGTGTCTGTCTGGAGCCCACCACATTATTTccatatttgtatttgtcttCCGTTTCTCCCTCATCTCCTCCTctgcctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576989.1 lncRNA upstream 94120 18543390 ~ 18584755 (+) True LOC113541128
TU395933 lncRNA upstream 96906 18543362 ~ 18581969 (+) False LOC113541128
TU395840 lncRNA upstream 147968 18500783 ~ 18530907 (+) True G334219
TU395839 lncRNA upstream 147968 18501508 ~ 18530907 (+) False G334219
TU395842 lncRNA upstream 200136 18474684 ~ 18478739 (+) False mcmdc2
TU396028 lncRNA downstream 4840 18743018 ~ 18747477 (+) True LOC117595806
TU396029 lncRNA downstream 22911 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 194324 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 194871 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 579679 19317857 ~ 19360737 (+) False dap
XM_026938176.2 mRNA upstream 136115 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 136115 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 136519 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 151180 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 151180 18523279 ~ 18527695 (+) True LOC113541230
XM_034298157.1 mRNA downstream 78056 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 78058 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 78058 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA downstream 78061 18816239 ~ 18931272 (+) True LOC113541280
XM_026937802.2 mRNA downstream 282828 19021006 ~ 19033661 (+) False zc2hc1a
trnaa-agc_16 other upstream 298861 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 299501 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 355580 18315358 ~ 18323295 (+) False mtfr1
TU396386 other downstream 601028 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 601028 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 601028 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 601028 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 601028 19339206 ~ 19427936 (+) False dap

Expression Profile