RNA id: TU396013


Basic Information

Item Value
RNA id TU396013
length 561
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G334371
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18688759 ~ 18726730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCCTGCGCCTGCTCCTCCTCTCCTGCCTTCGCGCAAATAGCACTACATAGGAGACAGTTGTTTCTGGCCGCCCCTCCGCCTGTCATGGCTGTCAGACCAAATCCCATGACTTATGGCTTCTCCAGATGTAAGAGATTTCTAAGCTGCCTCGAACAGCCTGCGGTTTTGTggtgtgaaagaaagagagagagagagggagagggagagaggagaggaggatgtggAGGTGGGTCATAACCGATGACTTGCCATCACATGGGCACCAGAAAGAAAAGATGTGAAACCAGATGTGGGGTGAAATAAAAGGCTTAAAGAGGAAGGCCAGTGGAGAACCTGCTCAGAAAAAGTGCCTGCAAGTGTTCCCCTTCAcccctactctctctctctccctctctctcttccccacACAGttcctgtgtgtgaatgttaatgatttttcttctttttctttctctctctctctctctctctcttttttcaacCCCCCTCCCTTTCCACCTCCCTCCCTCGCTCTTCCAGAGACACAGCGCCATTGTTTGTTGCGAGGGCTCTTTTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404150.2 lncRNA upstream 6936 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 8261 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA upstream 104004 18543390 ~ 18584755 (+) True LOC113541128
TU395933 lncRNA upstream 106790 18543362 ~ 18581969 (+) False LOC113541128
TU395840 lncRNA upstream 157852 18500783 ~ 18530907 (+) True G334219
TU396028 lncRNA downstream 16288 18743018 ~ 18747477 (+) True LOC117595806
TU396029 lncRNA downstream 34359 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 205772 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 206319 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 591127 19317857 ~ 19360737 (+) False dap
XM_026938176.2 mRNA upstream 145999 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 145999 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 146403 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 161064 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 161064 18523279 ~ 18527695 (+) True LOC113541230
XM_034298299.1 mRNA downstream 6230 18732960 ~ 18788585 (+) True zfhx4
XM_034298157.1 mRNA downstream 89504 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 89506 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 89506 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA downstream 89509 18816239 ~ 18931272 (+) True LOC113541280
trnaa-agc_16 other upstream 308745 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 309385 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 365464 18315358 ~ 18323295 (+) False mtfr1
TU396386 other downstream 612476 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 612476 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 612476 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 612476 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 612476 19339206 ~ 19427936 (+) False dap

Expression Profile