RNA id: TU396015


Basic Information

Item Value
RNA id TU396015
length 1260
RNA type TUCP
GC content 0.42
exon number 2
gene id G334373
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18693149 ~ 18717953 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAAACTTATCTAATGATCTCCTAATGATCTTTGTAATGTCTTTATAATGACTGAAGTTTGACCAGCCCTTTCTGACAAggttcagctctctgtgagcttcgACTCTGAGAGCGTCATTCAGAGATTCagacattacaaaataaaagtacaagtacaaaATAAACTCATGCGTGTTGGCTTTGGGAAGTCATCCTGAGAGGCAGCTCAGATTGTCAGAACGCCCCCGCTCCTGTTCACGGTGCCATGTTGCATTACGATCGTGCCATGTTTTAACCATCAACCTTTTTACCCTGTgtatgccacacacacacacactggctttcccatatcacacacacacacgcacacacacacacacacaaaataataataacgagAAAAACGCGAGTGTAAGGAAAACCAAGAATTCGGAGAAATCCCAGCCCCAAAACGGAGCGCgatgtttctttctgtttctctctctccctctgtctctctctcacacacacacacacgcgtgtaGATCAGCGCCGCTTCCGTGTTTTTATGGTAGGCTaccatttctctttctgttttcagttCCATCCTGTTGTTCCGTGCAGGCATCTCGTTGTTTTCCGCCTTACCGTTACTGCGTTATTGTCCTCAGCGTCAAGTTTTCAGTGGCTGTGCTTTACGAGACCGGGCTTAGAGAGCCAAGGATggagtcagagtgtgtgtgtgtgtgtgtgcgcgcgcgcgccgTTGCTTGCGGGCCAGTTTGAGGTTCTCGGCTCCGATTGGAAACGGGGTGACGGTGACACGCCGGGATCGATCAAGAGAGCGCAGGATAAAAACCGGCAGAGAGCCGGGAGTCAGGCTgcgtttcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgcgcTCTCTACATTATCAAAAATGCTCAAGCTTTATGGACTGCACGGATATAatctttaactttatttatttcgatttttattttgcactttttaaacCATTTCTTTACCTGCGTTAAGCGACATCTTTTTATTCTGCATGTAAACCCTCCATGTTTTCTGCGTATCTTTAGATCTGGTTGTAATTCTGGATCGCTTTGGATATATTTACAAATGTTcttgtttgtattattattatgatgatgattattattactttattaataataataaataataataaattattatttattatagcattatttatatatatttctacatCTTTTATTGTAATGACTAAATAAAGCTCTGTGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404150.2 lncRNA upstream 11326 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 12651 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA upstream 108394 18543390 ~ 18584755 (+) True LOC113541128
TU395933 lncRNA upstream 111180 18543362 ~ 18581969 (+) False LOC113541128
TU395840 lncRNA upstream 162242 18500783 ~ 18530907 (+) True G334219
TU396027 lncRNA downstream 4463 18722416 ~ 18747477 (+) False LOC117595806
TU396028 lncRNA downstream 25065 18743018 ~ 18747477 (+) True LOC117595806
TU396029 lncRNA downstream 43136 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 214549 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 215096 18933049 ~ 18933251 (+) True G334575
XM_026938176.2 mRNA upstream 150389 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 150389 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 150793 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 165454 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 165454 18523279 ~ 18527695 (+) True LOC113541230
XM_034298303.1 mRNA downstream 4434 18722387 ~ 18733080 (+) False LOC117595806
XM_034298299.1 mRNA downstream 15007 18732960 ~ 18788585 (+) True zfhx4
XM_034298157.1 mRNA downstream 98281 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 98283 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 98283 18816236 ~ 18931272 (+) False LOC113541280
trnaa-agc_16 other upstream 313135 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 313775 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576961.1 other upstream 369854 18315356 ~ 18323295 (+) False mtfr1
TU396386 other downstream 621253 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 621253 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 621253 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 621253 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 621253 19339206 ~ 19427936 (+) False dap

Expression Profile