RNA id: TU396028


Basic Information

Item Value
RNA id TU396028
length 4432
lncRNA type intronic
GC content 0.43
exon number 2
gene id LOC117595806
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18712048 ~ 18747477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtacataataaataatgcgTTCTCATTTTGTACTAGGAGTCATTGTCTTGAAGTTCATTCTAGTCCAGAACTGACCTCCTGACCTGAATGTGTGCAGAAGACAGTCTTTTCTCAAGCATGTGACCAGAGAATGCCACTGCATGCCAGTCTTTTAGTCCCCATACACAGAAGGCCAGTGTGTGACAGCTGTAATAATGGCTCAGTTTCTGGCACAGTGACCTGAGCTTTTGCATTTTCTCCATTTCCCTGTTCATTTTCCTCCACACTATGTTCACGAAGCAGGCGCAAGGGATCCCACTTCATACCCACTATCTCAGGCCTAATGATACATACCAGATCAACAACATTAGCTCCCTGTGAAAACATTTCCCTCTCCGTCTCCCCTGCGTGTGCTATTACTGCTGGTGAGGTATGTGTGAAGTCGCCGGATGCTTCGTTCCCAAAGCTCACAGCTGTATTTACTGCAGGAGTGAGTGAGCGAGAATCAGCGCTAACGGCAATCGATGAAATATCGTGCCACAGATCAATCAGCGTTTTAAAATCGTTAAAAGACATTTCTCACAGTCTGGTCTCTTGGCAGATGGGAGAGtagaacacatacacatacatgtgCACATGGACACACtggaaataaagtaataaatagatcatgcaatataatataatataatatgaaatgCATGTGTGACGTGGAAAAATCAGCTGGGAAAGGTCGTTGGGAAGATCTGTGTGCATGGGTTTCTCTGTTAGTCATGTGAAAGCATTTTACAATAGTTCTGTCCATCACTGTTCTGGATTAGTCTTGCACGTTAGCTCATACCTAGCCCAAAACCTGGACTACTTAAATAACATATTGTGGATGGATATAGTTATGGACTGGTCATTTTCAGAGAGACCAGTGGGTGTGTCCTGCACTCCTCTATCACTCTTCTTGAGAAATCTCACACCACAGAAAGACTCATTGTATTAATTTGCTTACTCTTTTTGGCCTCCATTTGTGaggatgattattattgttacatgACCTCTAAGCTGCTCACCAATAAGGCCCTGCCTTAGCCTGAATACCCAAAGCCACAATTACATGTGACATCCCTGATGGATtttgcaaaggaaaaaaaacaaatagcgCAGGCAATTTGGAGCCCTTTGATACATTCCTTCGGATTTGTATAGGCAGGGGGAGAGCAAGGGGCCGAACGAGATGCTTTTTCAGAGCCATTGCATGCTTTTCGCAGAGAAGACAGTGGCCTTGTGAAAGAGCTCGGAAATGGAATGCAGGGGCAGGCATACCTCTCGCACAAGAATCTCGGTCAGGTTGCCAACAACGTCTATGATAtagcatttcatttatttcttcaggCGCTTACTGGTAACATGTGTTTGCGGGGTGTCAGTATTGATGGAATGGTATATCTGGCTGGCATCCAAGTGAGGCTGGTATGTGTTTAAAATGCTTTGAGGAACAAAACCAGCTTTTGTTGCTtgtccttttttcccctgactTGCAGGGTCATAGAGTAACACCACTCCTTCTCAAAGGGGATCTTTAGGGGATAAAGGAAAGTGTGAAGGCAGAAAATGCTGATGCATttagatacagatacagtttTTATTTCACCACACCATGTTATTAGGAAATATTTGTGGTGGTTACGTGGCTCCAGGGCAATTATGCCACAGCTTATTTTAGGTACGTGTTCATTAGGCATGTTTTTTATGGTTAATGACAGGAAAAAAAGGCATGTTTGCACAGAATGCTCTAATTTGTCTTTGGTTAGGGATGAACTgattctctctttccttccttttctatGGGAGTGAGTCAGAACTAGCTGAATTAACACTGATGCAAAACTCACCTTGTTTCTGAACGCTGCTAATGAGTTTGGTTTGTCACAGCGGAAACTCCTACTGTCGTCAGGAGACAGGCCGAACACGAAGGGGTGAGAGGAGGTGTTTTGTAATCATTGAAGTcggcataaataaataagtcccCTTGTCAGGTTGCAGGGGGAGTGAATAAACATGCTCCATGGGAATTGGGGCTCCGTTTGACAGGTGAAGAGGGGTCCCTGGTGCCTTGATTTGCATTGTTTTGGCAGCCTGGCACTGTGCTGTGTTCCCCCTCTGCGCTGTCAGATGGATGCCTGATTAGGCCGAGGGAGAGGGGTACGCCCCTCAGACCACCCGCTTTGGGAATCCCCGCGTCTGTGTCCCTGGCACGCTGGCATGATGAGGGATGCCCAGAGACGACATGTTAGCGAAAATGATTGGTCCCCGATGAGTTCCGGCTCTTGGTTGTTTGCCAAATGCTAATCCAGAACAATTATCCATCAAAGACACGAGTGTGCCCCATATTGTCCTTGATGAGCCTTTTTGCCACCAACACTTGGACTGATTTCAGAGTTCTGCTTATTCCCAAAGTGCTTGAGAAATGGCTTTTTGAAAAGATTTATCTGTTGGCGTCGTTTTCTGCTTTTGTTCTTCTGGCACCCTTAACACACCTCCTCAATAAGGTTAGGCTGAATTCTTTTATAAATAGGACTCCTCTCTTTTGCCAGCGGTTTCCTGACATTTAGGGAGTGTGCTGGATGTTGGTTGAGGGGGGGTAGAATATGTTACACGATGCCacaaacattttgatttttgCAGGCTGCGTATAACCGTTCCCCAAGCCTGGTAAGTTTAAACCTCATAAATCAGAAATCTCCAGGCTTGAGGTTCAGATCACCTTGGGTGCATGCCAACGGGTTCTataaaagggaaaagaaaaataccATATTTCAATATAGGCCTTAAGAAAACAACCAGGAATTTGCTGATTTAGAATATACTagaatatattaatgttttctaAAATTGTAGACAGTTTGTTTCTGTGTGATACTTAAACCATTTGACAAGTCCGgttgtattgtgttttattaggACCATGAAAACGGATACTCAGCAATAACTGTGTGCAAGAATAATTTAAGATCTGCGGTCAACCCCGTTCACATGCGATGCAAATCTACTTTATATTACCCAGTAATTGAGGCTGCTAAAGTGGGGTAAAATATGGCGACAGGAGGATGAGTGTACCTCATACAATAGCCAGCTAACAAACCCCAAGCTAATGGTTGTTTATCAGCGATAGTTATTAATCGTAATATGGCTCGGTCATGCAGAGGGAAATTATTTTGCCGTTTTCTCAGAAACCATTTTAATAGACCTGAGCTGGAATGTTTCAGTATGCTATTTGTGCTATTGAAAATCAATTAATCATTCAAAGGTTGTCCAGACAACTGGTTTCAGAGAACATAGGGAGGAGTTTTAATTGCTTTGAGATTGCGTTTGGCCAAACTTGATGTATAAATGAGGTTTCGTAAGTGCAAACAATAGGAATGAAATTCTACATTTGTTGTATATGCAGTTTATATAATTGTGCATTTCTTCATACATGACAACCACTTCTGTGGATTTGTGTCTTTAGGTGAGAAGTGTGGAGCTCGTAATGTTAAGTGAGAGGCCTTTTTGAAGGCTTTATGTGCCTGCTCTGATGGCCTGGACTCTGTTTTAGGGTTCTAAACGCACAGGGAGGCCGAAACAAGTAACCTCCGGGGTTAGTCGCCCGGGGAGGGGCCCCGGctttaagaaaagaaacaaagataGCCGTAATTAATGATCCTGAATTCGGGCCAAAAAAGCTTTCTTGTGGCAACTTCAACTTAATTAAAACTTAGGACATTTCAAAGGCCGTGTTGAGCCCCCGCACGGAGCGCAGTCCAGCAGACCCGTGAGAAAATACtagcaagtttaaaaaaagagaaaaaaaaagatgtgtgttACCACTGGTGCCATGACTCTAATCTCTGACAGTCAAAGAATCTATTTAGTCAAAGGCTTTTCTTTTAGGGAGCTCACACCTGCAGGCTGGCTGGCACTTCCTCCCAGTTTGAGAGAAGGCCCGTTTTGTGTTCCAGCGGAAGATCAGATAATGGAGGCCTTGCTCTcgcttttgtttttgtgcattgtTCATTAGCCTCCGAGTACTGTAGGCACACTTGATATGCTTGGCTTGCCTGGGGAATAGCACTGGGGGATGGGCTTCTGTTCGTGTGGGGGTAAGTAAGGGtgttttgtatatatgtatatatatatatatatatatatatatatatgtgtgtgtcgtgctgTAGGTGGGTGGCAAGGTTACCATTCTGCGTGAAAGCCTTAGCCTTGCATGGTGCAACTCTGCACAATTTTAATGCAAAACTTCAGCCTAAATTAAAGGCCCACAATTGGCAGGCAGTCGTGAATGCAGGAACCCCGCCGCTCGCCACACATCGGGCTGCAAAGAACAATATGCAATGCTGGACAGTTCGGATTGTGCACACAAAGCTGAGGTTTTAAATACtcctacgtttttttttttttttttgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395987 lncRNA upstream 4840 18678875 ~ 18738178 (+) True G334345
TU396013 lncRNA upstream 16288 18688759 ~ 18726730 (+) True G334371
XR_004576991.1 lncRNA upstream 36925 18705292 ~ 18706093 (+) True LOC117595807
XR_003404150.2 lncRNA upstream 61195 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 62520 18543390 ~ 18680498 (+) False LOC113541128
TU396029 lncRNA downstream 13612 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 185025 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 185572 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 570380 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA downstream 570380 19317857 ~ 19360737 (+) False dap
XM_034298302.1 mRNA upstream 9938 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA upstream 9938 18716310 ~ 18733080 (+) False LOC117595806
XM_034298300.1 mRNA upstream 9938 18716310 ~ 18733080 (+) False LOC117595806
XM_034298303.1 mRNA upstream 9938 18722387 ~ 18733080 (+) False LOC117595806
XM_026938176.2 mRNA upstream 200258 18530475 ~ 18542760 (+) True hnf4g
XM_034298157.1 mRNA downstream 68757 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 68759 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 68759 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA downstream 68762 18816239 ~ 18931272 (+) True LOC113541280
XM_026937802.2 mRNA downstream 273529 19021006 ~ 19033661 (+) False zc2hc1a
TU396015 other upstream 25065 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 363004 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 363644 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 419723 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 591729 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 591729 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 591729 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 591729 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 591729 19339206 ~ 19427936 (+) False dap

Expression Profile