RNA id: XM_034298301.1


Basic Information

Item Value
RNA id XM_034298301.1
length 2513
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC117595806
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18712048 ~ 18747477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttccaagataCTTGGAGGATTATTgagtttttctcctttttttgttaCCAACTTTCGCTCTCCTTGGATGTGATTTTCTTCGAAAAGGCAGAACATTTCGCGAGAAGGAGCGGAGGAAGCTGCGGGGGGGACGAgtaagtttttttccccaactttCATGGAGTAGTTGGTGTAAGATTCAGGTCCCTGACAGACTGGATGAAATGAGATCCCCATGTAGCGATTGCCATGGAAACCTGTGACTCCCCTTCTCTTTTATGGCAGGAAAATGGGCAGAAGATATCAAAGCTACGTGAAACGCCACATCTTGATAATGAGGTGCCAGAGAAAGTCCCTGGGATGGAGCCTGACAAGGAAAACAGCCCTGCGGACGACCACCTAAGGACGGACGAGAACCGGCGAGAGTTTGCATCGGGATTGAGCACGGAGAATGCAGCTGCCACCCCGGGCGCCTCCACTAAAGAGATCCCCTGCAACGAATGTGCCACTTCTTTCTCAagtttacaaaaatacatgGAGCACCACTGCCCAAACGCCCGCCTTCCCCTTCTGAAGGACGAGAACGAGAGCGAGGTCAGTGACCTCGAGGACAGCGATGTGGAGAACCTGACAGGAGAGATAGTTTACCAGCCTGATGGCTCAGCTTTCATTCTTGAGGACTCCAAAGAAAGTGGTCAGAACGCCCAGTCAGGTGTCAAAAGCCTGTTTTCCCCAGCACTGTTTTCAAACTCCCAAACCGGTGCCGGGGACAAGACTGAGCAGTCTGCCACTACCCCCATGTCCTTTTACCCACAGGTGATCAATACTTTTCACATTGCTTCATCCCTCGGGAAACCATTTACAGCCGATCAGGCTTTCCCAAATACCTCAGCATTAGCAGGAGTTGGTCCTGTGTTGCACAGTTTCCGTGTCTACGATCTCCGACACAAGAGTGATAAAGACTATCTTACCATTGATGGCGCAGCCAAAAACTCCTGTGTGTCCAAAGATGTTCCTAACAATGTGGACTTGTCCAAATTTGATGGTTGCATAAGCGATGGGAAGAGGAAACCCATTCTGATGTGTTTCTTGTGCAAGCTGTCTTTTGGTTATAGTAGGTCATTTGTAACCCATGCTGTGCATGATCATCGGATGACCCTCaacgaggaggagcagaagctCCTTAGTAATAAATATGTCTCTGCCATAATACAGGGCATTGGCAAAGACAAAGAACCTCTTATAAGCTTTCTGGAACCAAAAAAATCTAATTCTGTGTTACCCCACTTTTCTACTGCAAACTTCATGGGCCCTGATCCAGGCATTCGCGGCCTATGGAACGCCTTACACGCGGAGAACGGCGATTCCTTGCAGGCTGGTTTTGCCTTCTTGAAAGGAAGCGCCAGTTCAGCTTCCTCTGCAGAGCAGTCGCCCAGGAGTACCCAAATGCCAAAGGCTGAGATAACACTTGGGGGAACACCCGCCTCAGCACTTAAGTCTCCTGTCGGCTCTGCTTCCCTCCATTGCTCATCTCCAGGGGCTAGGGACCAGGAGAGCAACTGTGAGCGGCAGAAGAACGCTAGCACTTTGCATTCTAATGGGGAGTTCGCCATCAAAAGTGAACCAGGAGATGCAGTCGATGCAGAGGAGGACGAAGATATGTACTTAAACGAGCTTGATGAAGATGGTGTAGATGAACTAGTGGACAATACCAGTAGCAAAGATTTCCCTCTTTTAAACCAAAGCATTTCTCCTTTATCATCCAGTGTGCTAAAATTTACTGAAAGGGGTAGCTCTTCTTCCTCTGTGACTGTTCCCGATGACTTAGAGAAAGGTAAACATGCTGCCGACTCCGTCAACTGCATCGGAGGCAGCAAGGACTACGGTGACTCTAACGGTGGCAGAGATGGCACGCCGCCCTCTCATCCCCTCGACCTGATGCGACGAGATGATGAAAGCCCGGGCCCTCTGCACCAGCATGCTGCCACGCCCAGCACGCCCAGCACTCCTGGCCCTGCGGAGGGTTCCCCAGGCAGTGGCATTGAGTGCCCAAAGTGTGACACTGTGCTCGGGTCCTCCCGCTCTCTGGGCGGCCACATGACCATGATGCACTCACGGAATTCCTGCAAAACGCTCAAGTGCCCCAAGTGCAACTGGCACTACAAGTACCAGCAGACACTGGACGCCCACATGAAGGAGAAGCACCCAGAGTCGGGCGGCTCCTGTGTGTACTGTCGCACTGGGCAGGCTCACCCGCGCCTAGCCCGGGGCGAGAGTTACACATGTGGTTACAAGCCTTTCCGCTGCGAGGTGTGCAACTACTCCACCACCACCAAAGGCAACCTTAGCATCCATATGCAGTCAGACAAGCATCTAAATAATGTGCAAAACCTGCAGAATGGCGGCTCAGAGCCCACCTACAACCACGCCGCCCCCGTCGCCGGGTGGCGCCCTGAGCAGCTGCAGTGCACCCTCGCCGTCCAAGCCAAAGCAGAAGCCCACTTGGCGCTGTGAGGTGTGCGATTACGAAAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576991.1 lncRNA upstream 10217 18705292 ~ 18706093 (+) True LOC117595807
XR_003404150.2 lncRNA upstream 34487 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA upstream 35812 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA upstream 131555 18543390 ~ 18584755 (+) True LOC113541128
TU395933 lncRNA upstream 134341 18543362 ~ 18581969 (+) False LOC113541128
TU396028 lncRNA downstream 9938 18743018 ~ 18747477 (+) True LOC117595806
TU396029 lncRNA downstream 28009 18761089 ~ 18854003 (+) True G334386
TU396219 lncRNA downstream 199422 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 199969 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 584777 19317857 ~ 19360737 (+) False dap
XM_026938176.2 mRNA upstream 173550 18530475 ~ 18542760 (+) True hnf4g
XM_026938175.2 mRNA upstream 173550 18534278 ~ 18542760 (+) False hnf4g
XM_026938177.2 mRNA upstream 173954 18534281 ~ 18542356 (+) False hnf4g
XM_034298018.1 mRNA upstream 188615 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 188615 18523279 ~ 18527695 (+) True LOC113541230
XM_034298157.1 mRNA downstream 83154 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA downstream 83156 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA downstream 83156 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA downstream 83159 18816239 ~ 18931272 (+) True LOC113541280
XM_026937802.2 mRNA downstream 287926 19021006 ~ 19033661 (+) False zc2hc1a
trnaa-agc_16 other upstream 336296 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 336936 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 393015 18315358 ~ 18323295 (+) False mtfr1
TU396386 other downstream 606126 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 606126 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 606126 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 606126 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 606126 19339206 ~ 19427936 (+) False dap

Expression Profile