RNA id: TU396072


Basic Information

Item Value
RNA id TU396072
length 473
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G334427
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18584763 ~ 18585235 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGATTTCAAACatattgttgtgtttatgtttCTCATAAACAGTTCATACAGAACGAATTCACtcacattgaaaaaaaaatccacatatcCATCATCATACTACACATGGTGAATGTAACAAAGTAGCTCTTACATGATTTCACTTGCAATCTCCGATATATTATGTGTAATTTCCACAGTACGTAATACAGGACGTAAGACtcatatcagaaaatgaaagaagaatgACTACAGCCTAAGAACGTAGGTGATAAGAACGCATGTATGTCCAGTATTCTTGCCTGAACCTGCATGCATTAGCGTAgttataaatattgatgtgtGCTACAAATGGCAGCGTAAATGTATAGCTTCTGAGGGATTAGCATGTTTAAAGAAATGAAGCATGTAATGGCAGGTAGTTTCACCTCCATTACTGCATGCTCATCACAATTCCTCAATTTCTACTCTTACGAGGCGCACATCAAac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396071 lncRNA downstream 451 18583602 ~ 18584312 (-) True G334426
TU396070 lncRNA downstream 1738 18582473 ~ 18583025 (-) True G334425
XR_003404164.2 lncRNA downstream 105980 18474666 ~ 18478783 (-) False LOC113541286
TU396115 lncRNA upstream 164160 18749395 ~ 18749913 (-) True G334470
TU396116 lncRNA upstream 170635 18755870 ~ 18759552 (-) True G334471
TU396112 lncRNA upstream 200257 18785492 ~ 18789747 (-) True G334467
TU396216 lncRNA upstream 344744 18929979 ~ 18930439 (-) True G334570
TU396220 lncRNA upstream 347394 18932629 ~ 18932840 (-) True G334574
XM_026937841.2 mRNA downstream 82681 18496163 ~ 18502082 (-) False cops5
XM_026937840.2 mRNA downstream 82706 18496163 ~ 18502057 (-) True cops5
XM_034298212.1 mRNA downstream 94182 18483387 ~ 18490581 (-) False ppp1r42
XM_026938172.2 mRNA downstream 94182 18483387 ~ 18490581 (-) True ppp1r42
XM_026938173.2 mRNA downstream 102363 18479679 ~ 18482400 (-) True LOC113541285
XM_026938168.2 mRNA upstream 223359 18808594 ~ 18816074 (-) True pex2
XM_026938262.2 mRNA upstream 420263 19005498 ~ 19008927 (-) False pkia
XM_026938261.2 mRNA upstream 420263 19005498 ~ 19008927 (-) False pkia
XM_026938260.2 mRNA upstream 420264 19005499 ~ 19015855 (-) False pkia
XM_034297799.1 mRNA upstream 420264 19005499 ~ 19008689 (-) True pkia
TU395862 other downstream 64558 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 141768 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 205029 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 205642 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 657928 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 990873 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 1015492 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 1594177 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 1657285 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 1661331 20246566 ~ 20248461 (-) False otos

Expression Profile