RNA id: TU396116


Basic Information

Item Value
RNA id TU396116
length 3683
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G334471
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18755870 ~ 18759552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCCTACCCAGGATTCTTTAGTGAGGGGGGGGTGGCTATCTAGCACAAAGCAGGACCCAACCAGCTCAAGTTCCCCACTTTTTAAAGTTCTTTAAAGGCTCCATGTGTCATTTAGTTGAGGGCATGGTCTGCACTCATGaacaatgcattaaaaatactCCAACGAATGGTGTTGTGTAAAAAACACTCCATTGTCCATTAAAATTAAACCTACACCAGGCGTTGAAAGCTTGTTGCAACACACTGTGATATAGTAACACAACCAATAGGAGATGGTTTGGAGTGAGGCTTCAGTCCTTTACGTCTAGGTTTAGCAAGACAGAGGAGAATATAACTATAAAAGCTGTAATGTTACAATCCAACTCTCCAAAtctgcactcttagaaaaatggGCTCTTCAAGagttctcaaacattttggaAAAGCAAAACCACAGACCCTTCATTAgacatttattgtttaaaaaagatttGACACATTAATTAACCATGTACAAAACTATCTTGGCTATTTATGCAAGCCAGAGAGTTTCTGAACTTTCTGCTCaaaaaactcatttttattaacatttttaatcagattcaggttgacattatttataaaaatgataaatttgATAATAGATAGGTTGTAGttttcaccactgtaacaaaattagaaACTTGTAGACTCCTTGGCTGTGCTTCACAGACCTCGCTTTGAGAATGTTGGCTTTAAGGGTTCATttgataattaagggttcttatctTGAAAAACGGTTCTACTCAGAACCTCTTCTCAGGCATACACTCCGTTTTAGGACTCTGTTGTAGAAGGAAAACCGAGGAATCCTTAAGGGTTCTCAATTTTCTAATTATGCTTAGGACACTGCAAAATTTCACTAAAATAGATGCTAGCCTGAAAACAGTGCTGTAGCTCTACTCTTTCATTCAGTATAACAGAAAAAAGCATTGAtctatagtaataaaaaaaaaaaaaattctgacagATACCAAAAATGTCCTTGTAAAAGCATTGTTCATAATAGGTGCTTTAGCGCATTAAACTCCTAGAAGAttttctattagtttcactgtagttactgaataacatgctttaagatgaataactgaatactAAGCCGAGAGTTTAAGAAGTTAAATATGCAGGTTGAGAGGGTCTGAATAAAACAGCAGTGTGTTGCTACACTTTGTAAAGGGAGTAGATTATTAATAGTGGGCAGGTCATGCCctaaaataagtaataattcTTTGTTATTGGCTTGGAGTAGGCTACCCTCAAGTGCAAAgcgttttgtttttcttctttaaaggATAAGAAAGCTAAAACACATATTATGGCAGTGTTTCTAACCTCGCTTTTATTCATAAATGAATGCTGGAGACCTGGAGGGAACCCTTGTTTCAGGTATGCTTGGTTAAGATCTCGAGGGCTAAAGTGGGTCTCgggaaataaagacagaaacgAGCTCTTGATCGTGCCGTAATGCTGCTGCTGCGTGTGTGTTGAGAGTGTTTCTTTACACTATACATTATGCAAATTCCTCCTGCACACCTAGACACAGCAGGATAATAATCAGCAACCCCATTCACTAATCACAGAGTTTAACACGGCACGTTGTCAGCTCTCCCAAGTGTCtcccatgtgtatgtgtgagacaCGCTTAATTCAGATCAGACGTAATAACAGACTGAAGTAAAACCACTCCTGCCCAGATGGAGCCTTGTAGAGGATGCAGACACACATGCATCTCCTTCATACAAGCAGATTAAATGAAAAttcagcattattattattgagcaGAAAAGGCCTCACTCTGGTTATAATTTTAACACTAGCAGTCCCTACTGTACTCCCAGCTAATCGTGTGTCTTTAACGCAGTCCAAGATGATGGAATCATGCAGGAATCATCAGCTACTGCTCCGGGAACTCTCTGATAGCACCAGGCCTCCTTGATCGCACTCgccttttatttaaaacagcaCCAATCCTGCGGACCAACTTCttttcatttacatacattagCGGAGTTCAAACGCGCCACTAGCCATGAGCTAGTTCCCCACATAACTTCTGAATCCGTCTGCTTAATGGCTCCCCACAATGCAAGCAACttggaaaaagacaaaaaggggAGGGGTAATTTCActattctctttttttaatccatttaattgattatatttatccatttattaggAACTGGAAAGTGGCTAGCATTAGCTGCTGTTCATTTCAATGGGGGGGTTTCCTCACTCATGACTAGCCCATGAGGAAGCACAGGTACTGGACGGTGTCACCTTTGGTTCATGGGAACATAATTTGAGCATGTGACTGTTTACTACGCAAATAGTAACTTTAAATTGTGATGTGAAAACTGCATTGTGATGTTTAAGTTCCCCTAAAAAATCAAACGATCACTAGAAAAACATCTactgtaacagaacaaacacacagaaacctcAACGTTGCGTGGAAATAATATGAGGAATGAGGAAACATGTTGGATTTTAAGATAATGGATTTTATACCACTTTAAACAGATGCACTAAGTGAACACGGAGACTGTATTAAGTTGAAATTCCCAGCTGTATTAACTCTGAACCCGGGTTAAGCTGCAAAGCTCCGAATGGTTAGTGACAATAAGGCAAGGCTAGGGGTAATCAATACCAGCTATCAATCCTACACTTTGTTCTGATGGATGAGGACAAGAGCAGGCTGAGGATAAGCGAAAATGAGAAGCATAGCCCGTGCCAAAACGacaagaaatgaaagaaatctGTTTGTCAAAAAGCACTGAATTGGTGCAGGCAATTTAACCTGGTACATttgcagagaaaataaataagcaggtaaataaatatataatgcttCCTGAGGCCCCGTGCATCGAGTGCAAGGTCAGTGGAGTGAACACTGGTGcaaaggagggagggagggaaggaggaagAAAGAATGGTGTGATGGCCGGAGTCAGGACTAATTACTCGCAGGCACAGCAGTGGAAGAGGGGGTCACTAACTTTAGCCTGACACCTGAACGCCACAGCCATCAGCGGCCCCCGAGCCTAATCGCGAGTGATAGGACTTGGGCTCTGCGCTCTGGGAGAGATGATAGCTAATGACAGGGGTGTtggatacacacacatcacgcTACCAGTCAGCAGTGTCCAAGCGGAAATCCGTCCATATCATCACACGTTCATATTAACACCACTTCAGACTTGTAGCGCTTTATGCAATCGCTTAATTGTCGCTCTGTGTTGCCTGTCTTTGTGTTCGACGCACTTTGACAATGGCTTGTCTCTTTTAATGCCTTCTGACAGTTAGCATTGTACTATCTGCTGCGGTTAGTGTCAGTGGTGGCGCTGCACAATTAAAATGCCGCGACGCAACTGGCTTGTCTGAATTAAGTCCAGATCAGTGCTGCTGCTATTGCTAATTCCTCAACTCTTAACACTCGACCCACTTTGAATCATCACTATTAGCACTTACACCTTCCCCGGTCATGTGATCTGTGCTTTAAACCATCTATCCTCCTTTTGTCACCAGCCCACTATTCACGCACTAAGCTCAGCTTATTGTTATTGTTCGCCCCAGAACAAAAAAAGgatatgcctttttttttaaatatgcgtAAATAGAGGCTGCCATTGCACTGCAGCTGCAGTCGCTTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396115 lncRNA downstream 5957 18749395 ~ 18749913 (-) True G334470
TU396072 lncRNA downstream 170635 18584763 ~ 18585235 (-) True G334427
TU396071 lncRNA downstream 171558 18583602 ~ 18584312 (-) True G334426
TU396070 lncRNA downstream 172845 18582473 ~ 18583025 (-) True G334425
TU395889 lncRNA downstream 277112 18474680 ~ 18478758 (-) False LOC113541286
TU396112 lncRNA upstream 25940 18785492 ~ 18789747 (-) True G334467
TU396216 lncRNA upstream 170427 18929979 ~ 18930439 (-) True G334570
TU396220 lncRNA upstream 173077 18932629 ~ 18932840 (-) True G334574
TU396248 lncRNA upstream 201295 18960847 ~ 18961053 (-) True G334602
TU396268 lncRNA upstream 245970 19005522 ~ 19015784 (-) False pkia
XM_026937841.2 mRNA downstream 253788 18496163 ~ 18502082 (-) False cops5
XM_026937840.2 mRNA downstream 253813 18496163 ~ 18502057 (-) True cops5
XM_034298212.1 mRNA downstream 265289 18483387 ~ 18490581 (-) False ppp1r42
XM_026938172.2 mRNA downstream 265289 18483387 ~ 18490581 (-) True ppp1r42
XM_026938173.2 mRNA downstream 273470 18479679 ~ 18482400 (-) True LOC113541285
XM_026938168.2 mRNA upstream 49042 18808594 ~ 18816074 (-) True pex2
XM_026938262.2 mRNA upstream 245946 19005498 ~ 19008927 (-) False pkia
XM_026938261.2 mRNA upstream 245946 19005498 ~ 19008927 (-) False pkia
XM_026938260.2 mRNA upstream 245947 19005499 ~ 19015855 (-) False pkia
XM_034297799.1 mRNA upstream 245947 19005499 ~ 19008689 (-) True pkia
TU395862 other downstream 235665 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 312875 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 376136 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 376749 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 829035 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 816556 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 841175 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 1419860 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 1482968 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 1487014 20246566 ~ 20248461 (-) False otos

Expression Profile