RNA id: TU396219


Basic Information

Item Value
RNA id TU396219
length 209
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G334573
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18932502 ~ 18932710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGGAAATTAACAAACCTAAATATAATGAAACATAtcatttattatagaaatgtcTAGGAGAATCACAATTTGTTCCCTGTTTTATCTAAGTGAGCTGTAATGTACCACATCCTCCCGGGATACCAGGAATACTAAACATGGACATGTGGGTGAGGCTAGGAATACCGCAGACATTTAGTTGATCAAATGCAATCATCTCAGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396029 lncRNA upstream 78499 18761089 ~ 18854003 (+) True G334386
TU396027 lncRNA upstream 185025 18722416 ~ 18747477 (+) False LOC117595806
TU396028 lncRNA upstream 185025 18743018 ~ 18747477 (+) True LOC117595806
TU395987 lncRNA upstream 194324 18678875 ~ 18738178 (+) True G334345
TU396221 lncRNA downstream 339 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 385147 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA downstream 385147 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA downstream 413179 19345889 ~ 19351752 (+) True G334733
XR_004576958.1 lncRNA downstream 588655 19521365 ~ 19522260 (+) True LOC117595782
XM_034298157.1 mRNA upstream 1230 18816234 ~ 18931272 (+) False LOC113541280
XM_034298158.1 mRNA upstream 1230 18816236 ~ 18931272 (+) False LOC113541280
XM_034298155.1 mRNA upstream 1230 18816236 ~ 18931272 (+) False LOC113541280
XM_026938166.2 mRNA upstream 1230 18816239 ~ 18931272 (+) True LOC113541280
XM_034298299.1 mRNA upstream 143917 18732960 ~ 18788585 (+) True zfhx4
XM_026937802.2 mRNA downstream 88296 19021006 ~ 19033661 (+) False zc2hc1a
XM_026937801.2 mRNA downstream 88297 19021007 ~ 19033661 (+) True zc2hc1a
XM_026938090.2 mRNA downstream 128179 19060889 ~ 19328125 (+) True ctnnd2a
XM_026938091.2 mRNA downstream 128179 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298152.1 mRNA downstream 128179 19060889 ~ 19328125 (+) False ctnnd2a
TU396015 other upstream 214549 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 552488 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 553128 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 609207 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 406496 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 406496 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 406496 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 406496 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 406496 19339206 ~ 19427936 (+) False dap

Expression Profile