RNA id: TU396406


Basic Information

Item Value
RNA id TU396406
length 1921
lncRNA type intronic
GC content 0.42
exon number 2
gene id G334733
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19345889 ~ 19351752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCTCAAAAATGTGTCAGGCAAGGATGAACACATCAGACGTGTCAGCTAGGAGGCTGATACATGGTGTATTTGTCAGCGCTAGTCAtgtagcatttttgttttactccCGGGCAACATGCCAGTGTACACTTTATATACTGGACcatctgcatacacacacacacacacacacacgtgcgcgcgCATCATCTTCTGTCTCCGGAACGAGCTCATACCCAGTGTGAGAACAGCGAGCAGGTGGAAAAATTGCGCGTTTGTCGCAGCAAGTGGAGCGAGATGGCCTGGAGAGAACCTGCCACATGCAATCTGGCTTcttcagacagacagcaggGTGAAGCTTAATCGCTCCAAAGCGCTGATGTGAAGTGCCACACACCTGCTGAGCAGGGAACGCCCTCTCCCCGGTACCTGAGACGCTCCTGCGGGTCAGGCTCGAGAGGAACCACCGTTTAACCGAGAGTGATTTGTTCGAGGCTTCACACTGAGCCGAAACAGCCAGACGTATTTAATCGGGTTTCAGGGGTCACTGACTTCTCTACAGACGTCCCTGTGAAGTTCTGCAGAACATTTCTCCTCGTTTTTGGTCCTCTGTCTCAGATCAGAAGGAAGGACGACCAGCTATTGGCTGGAAGGAATCTGGAGCTTATGGTCATGtttaggtttgtttttttatcacGTGAGCTTGGATTCTGCATCCAAGCACAAAATTATGCTCTAATAATATAGATAATAATAGAGTAaatgctatagaaataaaacagtaaataactgcataaatactTCTGCTGAAAAATGAATGCTTAATACAAGAACTGGAATGGAAATCAGAATGAACATTAAAAACTATgacagtagtaataataataataataacaataataaactaaaataagaCATCAAATAAAAATTCTGAGGCCATATTGTTTCAgagtctgtgtttttgtttgtttgtttgtttgtttgttttatctcaAGTAATGATTTTGGTCATTGTTTTAGCTCGGTTTTACATGTgtatgtctctgtctgtctgtcagcctGATTGTTaatttatctctctgtctgttaatctatatgtttgtctgtttatctgtcatttatctgtctatctatctgtcgatctgtcagtgtgtctgtctgttaatctgtctgtctgtctgattagctgtctctctgtctatcttcaTGTCTTCGTGCCTAACCTGTGATAAAGGAGGCATTACCGCAACCTCTTGTTGATAGTAGCAGTCAGAGGCGTGatgttgatttttattaaatgagtCATTCGAGCATGTCCTGCTCCGTGTGTGAATTAAACACTGAAGAGCGAGTGTAATGAGGTTCGGAGGAGAGGAACGTTCACTGACAGTTCGATGATCGTTATTTTCATGCTAGTTTCCTCGTGGGGAGAGGAGCGTGCCCGAATACTCGTGTGTCGGTTCTGTTGATAGTTGACAATGGAACGATGCGAGTATCTTTCTCATTACTGcagcaagagtgtgtgtgtagtgtgcagtgtgtactgtgtagtgtatagtgtgtagtgtgcagtgtgtagtgtataccatgcagtgtatagtgtaccATGTGCAGTTTGTAGCGTGTAGtaaatagtgtacagtgtatagtgtgcagtatgtaatgtgtaatgtacagtgtatagtgtgcagtgtacagtgtatagtatGCAATGTATAGTATGcagtatgtaatgtgtaatgtacagtgtgcagtgtacagtgtatagtatgtaatgtgtagtgtgtagtgtacagtgtgtagtgtatattatgcagtatataaagtgtagtgtgtagtgtacagtgtgcagtgtatattatgcagtatatagtgtgtagtgtacagtgtgcagtgtatattatgcagtatatagtgtgtagtgtgtagtgtacagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396221 lncRNA upstream 412638 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 413179 18932502 ~ 18932710 (+) True G334573
TU396029 lncRNA upstream 491886 18761089 ~ 18854003 (+) True G334386
TU396027 lncRNA upstream 598412 18722416 ~ 18747477 (+) False LOC117595806
XR_004576958.1 lncRNA downstream 169613 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 209350 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 285116 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 352933 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 414718 19766470 ~ 19766826 (+) True G335214
XM_034298229.1 mRNA upstream 9239 19335026 ~ 19336650 (+) True LOC117595802
XM_034297842.1 mRNA upstream 10609 19332174 ~ 19335280 (+) True LOC117595764
XM_026938090.2 mRNA upstream 17764 19060889 ~ 19328125 (+) True ctnnd2a
XM_026938091.2 mRNA upstream 17764 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298152.1 mRNA upstream 17764 19060889 ~ 19328125 (+) False ctnnd2a
XM_026938081.2 mRNA downstream 40221 19391973 ~ 19395890 (+) True ndufb4
XM_026938115.2 mRNA downstream 78016 19429768 ~ 19436760 (+) True arxa
XM_026938116.2 mRNA downstream 78016 19429768 ~ 19435547 (+) False arxa
XM_026938288.2 mRNA downstream 146550 19498302 ~ 19506536 (+) False pcyt1ba
XM_026938285.2 mRNA downstream 146551 19498303 ~ 19506536 (+) True pcyt1ba
TU396015 other upstream 627936 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 965875 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 966515 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 1022594 18315360 ~ 18323295 (+) False mtfr1
TU396524 other downstream 224359 19576111 ~ 19577073 (+) True G334838
TU396585 other downstream 326729 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other downstream 328245 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396960 other downstream 436831 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 808648 20160400 ~ 20163106 (+) False ccl20b

Expression Profile