RNA id: TU396487


Basic Information

Item Value
RNA id TU396487
length 1164
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G334806
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19561102 ~ 19589060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cataaaacatgacaaacagTTTCAGGACAAACGGATTCCTACTCGCTATCTGCATGAACACGGTTCGATTTCACGCTTGGATTAAAGTTaatcttaaatttaaaaacagttcAAACAGTGACGAATCCAGATtcatttaaactgtttattctGTATGTAGTGCAAAAGGCACACCATGATCATCATATGCATGAATAATATGCAATAGTTTAAATAAAGCCTTAACGCacactttaaaaacacacacacgtgataaATAAGATTAGAGCTGAACATGTTACTGTGTAAACAATCAAAATCACAAGCCTCTGAACTCCCGATACGGAGCTCCAAAGTACCACGTTAAAGTAAAATCTGTACACAAACGGCATGCGGGATTATTAAAGAGTTCATTCTGAGAGTAAAAAGATTTTACTTGCATTGTAACAGCACTAGCGTTCAGTGTTTCTACCCCATGCATTATGACGCCGACCCTACGTTCACGCTAACGAGTGACACAAGTGACTCGTATCGCtcgtgggcgtggcctgtccagtaGCTATACGTAGCTACTAAGCACTGGTTTGATTTACTTGTTACGTGCGCGGCTTCGTATTAGCTTCGTTCTCAGatcagattagcaaagcgagctatctctactagctacgtacactcaccagaaccacaaacgatctctgctacttccgtccaagctttatttttttcttttttgtaaagtCTCTAATTAATAGACGGATAAGATGAAACTACACTTAttccatttgtgtgtgtaaattaactgcaggtaggaactaacgTTGTGAGGAAGAAACTGAGGATCGTTCGAGACAAGAGTTTGCATTTGTCGCTTCTTCACTGCGTCATTGACAAAATCTCAGTTTAAATGCTGCTGAAATCGTAGCTACGTCttgcacacactctcagaaaacaGCTCAGCCTTATCGCACGTTAGCGTGAACGTAGGGTCACTCTTTTCACGTAACGTCGCACGTTTATGATCACGTATTCCACATCTTTACTTTTGCAAGCCTTAAGAGTTATATCAAAACTACATCCTTTTAAAAACTCCTACATCAAACAAAGCGCACCTCATATTCAAGGAGAACTCCAAACATTTTCAACGTAAACTCTACACACCGtatcagtagtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576958.1 lncRNA upstream 38842 19521365 ~ 19522260 (+) True LOC117595782
TU396394 lncRNA upstream 200365 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA upstream 200365 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA upstream 209350 19345889 ~ 19351752 (+) True G334733
TU396221 lncRNA upstream 627851 18933049 ~ 18933251 (+) True G334575
TU396561 lncRNA downstream 47808 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 115625 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 177410 19766470 ~ 19766826 (+) True G335214
TU396940 lncRNA downstream 178403 19767463 ~ 19768343 (+) True G335215
TU396972 lncRNA downstream 235643 19824703 ~ 19824911 (+) True G335243
XM_026938288.2 mRNA upstream 54566 19498302 ~ 19506536 (+) False pcyt1ba
XM_026938285.2 mRNA upstream 54566 19498303 ~ 19506536 (+) True pcyt1ba
XM_026938115.2 mRNA upstream 124342 19429768 ~ 19436760 (+) True arxa
XM_026938116.2 mRNA upstream 125555 19429768 ~ 19435547 (+) False arxa
XM_026938081.2 mRNA upstream 165212 19391973 ~ 19395890 (+) True ndufb4
XM_026937824.2 mRNA downstream 11505 19600565 ~ 19603770 (+) True amer2
XM_026938183.2 mRNA downstream 89444 19678504 ~ 19683656 (+) False si:ch73-264p11.1
XM_034298169.1 mRNA downstream 90990 19680050 ~ 19683656 (+) False si:ch73-264p11.1
XM_034297890.1 mRNA downstream 99970 19689030 ~ 19703771 (+) False cip2a
XM_034297889.1 mRNA downstream 99970 19689030 ~ 19703771 (+) False cip2a
TU396392 other upstream 133166 19339206 ~ 19427936 (+) False dap
TU396585 other downstream 89421 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other downstream 90937 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396960 other downstream 199523 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 571340 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 685060 20274120 ~ 20275691 (+) False lrrc34

Expression Profile