Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU396561 |
| length | 364 |
| lncRNA type | read_through |
| GC content | 0.35 |
| exon number | 2 |
| gene id | cip2a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19636868 ~ 19703804 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU396487 | lncRNA | upstream | 47808 | 19561102 ~ 19589060 (+) | True | G334806 |
| XR_004576958.1 | lncRNA | upstream | 114608 | 19521365 ~ 19522260 (+) | True | LOC117595782 |
| TU396394 | lncRNA | upstream | 276131 | 19317857 ~ 19360737 (+) | False | dap |
| TU396400 | lncRNA | upstream | 276131 | 19317857 ~ 19360737 (+) | False | dap |
| TU396406 | lncRNA | upstream | 285116 | 19345889 ~ 19351752 (+) | True | G334733 |
| TU396588 | lncRNA | downstream | 881 | 19704685 ~ 19707006 (+) | True | G334888 |
| TU396939 | lncRNA | downstream | 62666 | 19766470 ~ 19766826 (+) | True | G335214 |
| TU396940 | lncRNA | downstream | 63659 | 19767463 ~ 19768343 (+) | True | G335215 |
| TU396972 | lncRNA | downstream | 120899 | 19824703 ~ 19824911 (+) | True | G335243 |
| TU397020 | lncRNA | downstream | 166577 | 19870381 ~ 19882836 (+) | False | smpx |
| XM_026937824.2 | mRNA | upstream | 33098 | 19600565 ~ 19603770 (+) | True | amer2 |
| XM_034298283.1 | mRNA | upstream | 43416 | 19579310 ~ 19593452 (+) | True | mtmr6 |
| XM_026938288.2 | mRNA | upstream | 130332 | 19498302 ~ 19506536 (+) | False | pcyt1ba |
| XM_026938285.2 | mRNA | upstream | 130332 | 19498303 ~ 19506536 (+) | True | pcyt1ba |
| XM_026938115.2 | mRNA | upstream | 200108 | 19429768 ~ 19436760 (+) | True | arxa |
| XM_026938138.2 | mRNA | downstream | 36253 | 19740057 ~ 19750055 (+) | True | LOC113541258 |
| XM_026938019.2 | mRNA | downstream | 166588 | 19870392 ~ 19882353 (+) | False | smpx |
| XM_026938018.2 | mRNA | downstream | 166628 | 19870432 ~ 19882353 (+) | False | smpx |
| XM_026937999.2 | mRNA | downstream | 180243 | 19884047 ~ 19887557 (+) | True | LOC113541169 |
| XM_026938021.2 | mRNA | downstream | 281528 | 19985332 ~ 19988036 (+) | True | camk2n2 |
| TU396524 | other | upstream | 59795 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396392 | other | upstream | 208932 | 19339206 ~ 19427936 (+) | False | dap |
| TU396960 | other | downstream | 84779 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU397154 | other | downstream | 456596 | 20160400 ~ 20163106 (+) | False | ccl20b |
| TU397368 | other | downstream | 570316 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 1040945 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 1040945 | 20744749 ~ 20764373 (+) | False | vipr2 |
