RNA id: XM_034297887.1


Basic Information

Item Value
RNA id XM_034297887.1
length 3380
RNA type mRNA
GC content 0.53
exon number 21
gene id cip2a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19636868 ~ 19703804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGACTGTTCCAGCTGCATTTCGAAGTTGAAAGCGGgaggaagtcagttttccagcACGAGCTGAAAGAACAGAGCTTTCTCTTTATAAcgttacaaaaaataaaaatacaacacaataaGTCAAGTTATTATATTAGGAGTATTCAGTGTAAGATAACAAGATTTTTAATGTCAGAATATCAGGAGGTTAAATCCTTTATAACGTTAATAGACTACACAAAAGAGTTAGCAAACATTAGTAAACATTGCTAGCTAGCAGATAAGCTAATTCGATCAGGTTTAAGTGATCTCTTGGTGTATTTACACGATTTGTTTATCCTGATCGATTAGGATTagagtttatatttaatttatagttGTTTGGCTTTGTTGGGATGGACGTGACGACGTGTCTGAAGTCTCTGCTTCTGGCGATTCGACAATACAGAACCAGCAGAGGCGCATTGAACGCATCACTGCTGCAGAAACACATGGAAGACTTGTCTGCCTTAAAGGGCTGCAGGATCTTGTCCTCAGGGCAGGTTCTCCCCAGTGAGTGTCTGAACGGCCTGCTGGAGGTAGCTGGAGATCCCAACACCAGTCCTGCTCTTACAGGCTGCGTCCTGTCTCTGCTCGCTCAGCTCGCAGCAGATGATGAGAGCAAAGAGGCGCTTCATAGCCGTTATAACATCGTTGGCACGCTGGCGACCATCATCCACTGTAACAGAGCTACACCTGAGGATCCGATCGTGCTACAGtgtcTTCAGGTCCTGCAGCATCTCACTTACAACGTCAGACTCCTGCACTGCGCGTCCCACATAGACGACCTCCTCACGTTCCTCATGCTCAACATCCAGTCTCAGAATGATGACATCACCAAGCCGTGCCTAGGCCTGATGGCTAATCTGTGTCGACACAACCAGTCTGTACAGATGCAGATTAAGTCTCAGAGTAATGTTAAAGCTTTTTACAGAGCTTTACTGAACCTCCTCCGGCACAACTGCCTCACTGTGGTCGTCTTCGCGCTCTCGATCTTGTCCAGCCTCACCCTCGGCGAGGAAGTTGGCCAGAAGTTGTTCAATGCAAAGAACATTCACCAGACCTTCCAGCTCATCTTTAACATCACAGTGAATGGAGATGGAACGCTGACAAGGAACTACGCTGTCGACTTACTGGTGGATCTGCTCAAAAACGCCAAGATTGCTGACTACCTCACCAAttATAAACACCTCCCTGTGTGTCTGAGCGAGGTGGTCGGCCTTCTCCACGGCAAAGACCCGGATACAGCGGTGAAGGTTCTGGAGCTGCTCGTGTCTCTGTGCTCGGTTCCGCCCCTGCGCAGACTCATCTGTCAGACGGTTTTAAAACCCGCCGCTCCTCGCCTGCAGCCCGCCGCCAGGAACCCCGCCCAGGTCAGGGGGGCGGAGCCGGGCCTGGCGCTGCTCCAGTGGGCCACATGCCCCCTGCAGGGACCGGAGCGGTGCTGCCTGCTGGCTCTGGAGCTCTTCACTGAGCtgtttgagGAGGTGATCGGTTCCTCGCAGTCCGGTTCCGCTCACTCGTTTCTGGAGCTCCTCCTCCCAGCGCTGCAGAGTTTACTGCAGACTCCAGACTTCAGCGCCGGAGACGAGCTGCTACAGAGGCACTGCGCGAGAGCTGGACGAGCGCTGGACCTCCTGCTAGTCCTGTGCGGAGACGACTTCCTGAAGACGCTGGTGGCGCAGCACGTGAGCTCGGAGCTGTGCGTGTCGCTGGTGGAGCTGCTGCTGTCTAACAGTCACGACTACGTCACCTCCATCTGCTCGGACTCGAGCTCGCGGCTCAGCCACGTGTGCTGTGAGACGGTCCTGAAGACTCTGGAGCTGATGAGCCAGCTGAAGCAGCACGTAGCCGACATGGAGACCTGCTTTTACCGGATGCTGCAGGACCAGCGCATGGTGACGCCTCTGTCTCAGGCCCTGACGTCTCCGCACCGAGAGCGAGTACACACGGCGCTGCGCGTCCTGTTTGAAGCCGCTCCGCTGCCCGATTTCCCCGCCGTCATtttAGGAGAAAGCATCGCAGCGAATAACGCGTACCGGCAGCGCGAGGGCGAGCTGAGCGTCAGAGGCAGCGGCGTTCAGGAGGACGGCGTCGCCCCAGCGAAGAGCTTTGCCCCGCCCACTGCTGCGCCGAACAGTCCGTCTCGCCAGAGCATCGACAGCCTCATCGAGAAACTGCAGAGCGGCATTCAGTTACAGGAGCAGATGAAAGACGTGCACATGTCCGAGATCATCGACGTGTACGAACAGAAAATCTCCGCCCTGGCCtctAAGGAAGGCCGTCTGCAGGACCTGTTGGAGGCCAAGGCTCTTGCTCTGTCTCAGGCCGACCGTCTGATCGCTCAGTACCGCTGTCAGAGAGCACAGGCTGAGGCTGAGGCCCGGAAGCTGGCGTCTCTGCTGAAGGACAcggagaggaggaaggaggagctGCAGGCTGAGCTGAGCGATCAGGTGATGGAGGTGGAGAAGCTAAAGAGCGACAGTCAGCAGCTCCTGCAGCACAACAGCCGCCTGCAGGCCGTGTCTGACGAACACCAGAACCTGAAGAGCACCTACAACCAGCTGCTGAGCAGGTACAATAAGAGCGAAGCGATGCTGAAGGAGCTCCAGGCTGCTCACATCTCCCTCACGCAGCAGGCCGAATCCCTGAGGAAGAGCAACGAGGGGCTCAAACTGCAGCAGGAGAGgttgtcGACGGAGCTGCagcagaaggaggagaagaTCTCAGCCATGGAAGCAGCCATGCAGGAGAAACACAAGACTATAGCGGAGCTGCAGGCTGAGGTGAGGAGGCAGGAGGAGCAGgctggagagatggaggagaacGTCAACATGCTGAAGAAGGAACTCGCCAAGACGGAGCAGGCCAGGAAGGACGCCAGCATCAAGGCCTCGTCTCTGGAGCTGCAAAGATCTCAGCTGGAGTCCAAACTgcagaagaaggaggaggagctgaACAAACACACGCAGATGATCGCCATGATCCACAGCCTGAGCAGCGGCAAACTGAAGAACGACGCTACAGCCAACCTTtctctgtgacacacacacacacacacacacacacacacactcactgtacacGTATCCAGATTAATGGACTCCAGAAGTAATGACTCCCTTTTTAGACACTGGTTTacatgcactacacacacacacacacacacacacacacacacacacacaccagccatgATGAACTGAGATGACAAACACaatatgaaatacatttttaaatatttttaactctGACATCCAGGTACCTTACTGACTTTTGTCTCGTTTTCTGTCTGCAATTTTTCTACATGTCATTCCTCTCatatcatattttaaataaataaataaataaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396487 lncRNA upstream 99971 19561102 ~ 19589060 (+) True G334806
XR_004576958.1 lncRNA upstream 166771 19521365 ~ 19522260 (+) True LOC117595782
TU396394 lncRNA upstream 328294 19317857 ~ 19360737 (+) False dap
TU396588 lncRNA downstream 914 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 62699 19766470 ~ 19766826 (+) True G335214
TU396940 lncRNA downstream 63692 19767463 ~ 19768343 (+) True G335215
TU396972 lncRNA downstream 120932 19824703 ~ 19824911 (+) True G335243
TU397020 lncRNA downstream 166610 19870381 ~ 19882836 (+) False smpx
XM_026938183.2 mRNA upstream 5375 19678504 ~ 19683656 (+) False si:ch73-264p11.1
XM_034298169.1 mRNA upstream 5375 19680050 ~ 19683656 (+) False si:ch73-264p11.1
XM_026937824.2 mRNA upstream 85261 19600565 ~ 19603770 (+) True amer2
XM_034298283.1 mRNA upstream 95579 19579310 ~ 19593452 (+) True mtmr6
XM_026938285.2 mRNA upstream 182495 19498303 ~ 19506536 (+) True pcyt1ba
XM_026938138.2 mRNA downstream 36286 19740057 ~ 19750055 (+) True LOC113541258
XM_026938019.2 mRNA downstream 166621 19870392 ~ 19882353 (+) False smpx
XM_026938018.2 mRNA downstream 166661 19870432 ~ 19882353 (+) False smpx
XM_026937999.2 mRNA downstream 180276 19884047 ~ 19887557 (+) True LOC113541169
XM_026938021.2 mRNA downstream 281561 19985332 ~ 19988036 (+) True camk2n2
TU396585 other upstream 5161 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 5161 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 111958 19576111 ~ 19577073 (+) True G334838
TU396399 other upstream 328294 19339206 ~ 19360737 (+) False dap
TU396960 other downstream 84812 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 456629 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 570349 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 1040978 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 1040978 20744749 ~ 20764373 (+) False vipr2

Expression Profile