RNA id: TU396585


Basic Information

Item Value
RNA id TU396585
length 1172
RNA type TUCP
GC content 0.41
exon number 5
gene id si:ch73-264p11.1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19678481 ~ 19683870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCACCTCAGTCAGCACTTCAGAGTCAGTCGTAGACTTTGCTTTGAAAGTTCCTCTCTTATGCAAGTCCTACTTTTtactaagaattttttttacactgaagtCAAAGCTTAAGACTATTCTTAAGAACATTTCTGAGATGTTTCAAGGTTTTGAGATGGACCCAAACCTTGGGTTGCTGTGGGATGCTGTGGCAGAATCGTAAGAGAGCTTCAATGAACTTCAGTGAAGAAGAATGGGCCAAAAATTCTCCAAAACcatTTGAAGAGGATTGTGTTAGCAGTTCCTGTGGAGGTTGAGGTGACTGAACCGGGGTGATGGAGCACATGGATCTGCTCTTCTATCACGGTCCCATCAGCAGAGAGCGGTGCGAGGAGATCCTGGGTGCAAAGGGAAAAGACGGATCGTATCTCATCCGGGAAAGCGAGACTATCCATGGAGCTCTGTGCCTCTGCGTCTACAAAAAGAAAGTGGTGTACACCTACAGAATCCTACAAACTCATACTGGATATTACACTTTACAGTGCAGGTGTGAAGGAGAAGTTTTTTAAGACGCTGGAAGATCTTGTTCATTATTATAAGAAGAGAAACCAGGGTTTAGCAACTCGCCTGCGTCACTCTGTGAAGAGGAAACAAACAGACCAGGAATCTGTGGTCTCTGATGACGGACCGGACTATGAGaACGTGGACCCTGATTATGTTGACGTGCTGCCAGACTGATTCTACTGAACTGTAATTTTTCTTGCAACAATAACCTCAAGCTTttagaaaacagaaacagactgtggaaataaaatgaactgCCGCTCGTGAGACTAATGTCAACTCTCATGTCTGCTGATAGCTTTTTGTTCCTCCGTTGCAAACATCATACATAAAATTGTCTGAAAGTGTGCACCAGGTGAATAATTGTAAATgctgtatatgtaaataaattattttttggtTTATGGACATACCTAAGTGTAAATTATGACCCATTTTCTGAAAACTGTAGATATGGATATTCACTGTTTAAGAATTTTACAGATGGCATAAAGAAATAGTTTTACCGGTttgttttattctgattattatcACTTTGctaaaggagagaaaaagaagaactgGGAGTAAAGAATGAGGCTAATTGTTCATTTGGCCTAACCACTGGTCCTCCAGCGACCTgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396487 lncRNA upstream 89421 19561102 ~ 19589060 (+) True G334806
XR_004576958.1 lncRNA upstream 156221 19521365 ~ 19522260 (+) True LOC117595782
TU396394 lncRNA upstream 317744 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA upstream 317744 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA upstream 326729 19345889 ~ 19351752 (+) True G334733
TU396588 lncRNA downstream 20815 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 82600 19766470 ~ 19766826 (+) True G335214
TU396940 lncRNA downstream 83593 19767463 ~ 19768343 (+) True G335215
TU396972 lncRNA downstream 140833 19824703 ~ 19824911 (+) True G335243
TU397020 lncRNA downstream 186511 19870381 ~ 19882836 (+) False smpx
XM_026937824.2 mRNA upstream 74711 19600565 ~ 19603770 (+) True amer2
XM_034298283.1 mRNA upstream 85029 19579310 ~ 19593452 (+) True mtmr6
XM_026938288.2 mRNA upstream 171945 19498302 ~ 19506536 (+) False pcyt1ba
XM_026938285.2 mRNA upstream 171945 19498303 ~ 19506536 (+) True pcyt1ba
XM_026938115.2 mRNA upstream 241721 19429768 ~ 19436760 (+) True arxa
XM_034297890.1 mRNA downstream 5160 19689030 ~ 19703771 (+) False cip2a
XM_034297889.1 mRNA downstream 5160 19689030 ~ 19703771 (+) False cip2a
XM_034297887.1 mRNA downstream 5161 19689031 ~ 19703771 (+) True cip2a
XM_034297888.1 mRNA downstream 5161 19689031 ~ 19703771 (+) False cip2a
XM_026938138.2 mRNA downstream 56187 19740057 ~ 19750055 (+) True LOC113541258
TU396524 other upstream 101408 19576111 ~ 19577073 (+) True G334838
TU396392 other upstream 250545 19339206 ~ 19427936 (+) False dap
TU396960 other downstream 104713 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 476530 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 590250 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 1060879 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 1060879 20744749 ~ 20764373 (+) False vipr2

Expression Profile