Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU396808 |
| length | 372 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G335099 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19317859 ~ 19360738 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004576971.1 | lncRNA | downstream | 242593 | 19070338 ~ 19075266 (-) | True | LOC117595792 |
| TU396268 | lncRNA | downstream | 302075 | 19005522 ~ 19015784 (-) | False | pkia |
| TU396248 | lncRNA | downstream | 356806 | 18960847 ~ 18961053 (-) | True | G334602 |
| TU396220 | lncRNA | downstream | 385019 | 18932629 ~ 18932840 (-) | True | G334574 |
| TU396216 | lncRNA | downstream | 387420 | 18929979 ~ 18930439 (-) | True | G334570 |
| TU396814 | lncRNA | upstream | 31226 | 19391964 ~ 19428258 (-) | True | G335105 |
| XR_004576978.1 | lncRNA | upstream | 53490 | 19414228 ~ 19416072 (-) | True | LOC117595800 |
| TU396813 | lncRNA | upstream | 146350 | 19507088 ~ 19518309 (-) | False | pdk3a |
| TU396859 | lncRNA | upstream | 190302 | 19551040 ~ 19551530 (-) | True | G335149 |
| TU396860 | lncRNA | upstream | 200240 | 19560978 ~ 19564462 (-) | True | G335150 |
| XM_026938260.2 | mRNA | downstream | 302004 | 19005499 ~ 19015855 (-) | False | pkia |
| XM_026938262.2 | mRNA | downstream | 308932 | 19005498 ~ 19008927 (-) | False | pkia |
| XM_026938261.2 | mRNA | downstream | 308932 | 19005498 ~ 19008927 (-) | False | pkia |
| XM_034297799.1 | mRNA | downstream | 309170 | 19005499 ~ 19008689 (-) | True | pkia |
| XM_026938168.2 | mRNA | downstream | 501785 | 18808594 ~ 18816074 (-) | True | pex2 |
| XM_026937911.2 | mRNA | upstream | 2661 | 19363399 ~ 19377873 (-) | True | ankrd33ba |
| XM_026937921.2 | mRNA | upstream | 21750 | 19382488 ~ 19391528 (-) | True | ropn1l |
| XM_034297940.1 | mRNA | upstream | 24184 | 19384922 ~ 19391533 (-) | False | ropn1l |
| XM_026937920.2 | mRNA | upstream | 24188 | 19384926 ~ 19391532 (-) | False | ropn1l |
| XM_026938080.2 | mRNA | upstream | 35161 | 19395899 ~ 19411215 (-) | True | hgd |
| TU395862 | other | downstream | 797654 | 18444658 ~ 18520205 (-) | False | mybl1 |
| TU395863 | other | downstream | 874864 | 18442355 ~ 18442995 (-) | False | mybl1 |
| trnay-gua_4 | other | downstream | 938125 | 18379649 ~ 18379734 (-) | True | trnay-gua_4 |
| trnay-gua_3 | other | downstream | 938738 | 18379036 ~ 18379121 (-) | True | trnay-gua_3 |
| TU395529 | other | downstream | 1391024 | 17925075 ~ 17926835 (-) | False | zmp:0000000991 |
| TU396861 | other | upstream | 215370 | 19576108 ~ 19578920 (-) | False | nup58 |
| TU396884 | other | upstream | 239989 | 19600727 ~ 19603693 (-) | True | G335165 |
| TU397303 | other | upstream | 818674 | 20179412 ~ 20182412 (-) | True | G335523 |
| TU397559 | other | upstream | 881782 | 20242520 ~ 20246278 (-) | False | cops9 |
| TU397560 | other | upstream | 885828 | 20246566 ~ 20248461 (-) | False | otos |
