RNA id: TU396812


Basic Information

Item Value
RNA id TU396812
length 818
lncRNA type read_through
GC content 0.50
exon number 2
gene id G335103
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19359557 ~ 19404889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagaaaaaacgggTTCTGAGGATGTTGGTCAAGGCAGAACACTGGCAGGCACAGACAGAAAGGGACTGTGAGGAATGCTGGGAATCCCCCTGATGAACCTGAGCACTGACTTGGGAATTGGTTAGGAGCTGGTTTTGAATAAGTTGGGAATTGGTTGGTAATTGGGTGCAAACTGAGCGGCAATCATTTGGGAGCTGGTTGAAAACACGGGGGAAATTGGTTGGAAACTGTTTAGAAAGCAGCTGGGAATCATCTGGGAACAGGTTGGGAAATGACGGGCAATCAGTTGGGACCTGGCTGGAATTTGGTTGGAAATCTGATAGAAATCAATTGAGAACTGGTTGGAGACTGGTCGGGAATTAGCTAGGAAAAGGCTGGGAAATAGTTGGAAATTGGTTGGGAATCAGTTGCGAGTCAGTTAGGGATTGGCTGGGAATTGGTTGGGAATCGGATGGGGAATGGGCTGGATATCAGTCGGGAACTTGTTGAAAATTGACTGGGAATCGGCAGAAAACTGAGAAAATTAGTTGGGAGTCGATTAGAGACTGATTGAGAATCAGAAGGGAATCGAATGAAAAGTGGTTGGGGTTTGTTTTGGGATTGGTTGGGAGTGGGCTAGGAATGTGTGAGGAATAGACTGAGAATCGGTTGGGGGTTGTGGTGTGGTCCTTGTGCACTGGAAGAAGGTGGAGGTTCACTTGCGGGGCTGGTGGATGTGCTGGTTGATGTGGTGGGACGGCGGCAGCTTCTGCACCGAGGGTACAGGCTTCGTGTGAGCCACCTGAGCCGCGGCCGGGGTGAAGTCCTTATCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576971.1 lncRNA downstream 284291 19070338 ~ 19075266 (-) True LOC117595792
TU396268 lncRNA downstream 343773 19005522 ~ 19015784 (-) False pkia
TU396248 lncRNA downstream 398504 18960847 ~ 18961053 (-) True G334602
TU396220 lncRNA downstream 426717 18932629 ~ 18932840 (-) True G334574
TU396216 lncRNA downstream 429118 18929979 ~ 18930439 (-) True G334570
XR_004576978.1 lncRNA upstream 9339 19414228 ~ 19416072 (-) True LOC117595800
TU396813 lncRNA upstream 102199 19507088 ~ 19518309 (-) False pdk3a
TU396859 lncRNA upstream 146151 19551040 ~ 19551530 (-) True G335149
TU396860 lncRNA upstream 156089 19560978 ~ 19564462 (-) True G335150
TU396959 lncRNA upstream 367964 19772853 ~ 19773057 (-) True G335230
XM_026938260.2 mRNA downstream 343702 19005499 ~ 19015855 (-) False pkia
XM_026938262.2 mRNA downstream 350630 19005498 ~ 19008927 (-) False pkia
XM_026938261.2 mRNA downstream 350630 19005498 ~ 19008927 (-) False pkia
XM_034297799.1 mRNA downstream 350868 19005499 ~ 19008689 (-) True pkia
XM_026938168.2 mRNA downstream 543483 18808594 ~ 18816074 (-) True pex2
XM_034298246.1 mRNA upstream 34874 19439763 ~ 19489383 (-) False pola1
XM_034298245.1 mRNA upstream 34874 19439763 ~ 19489383 (-) True pola1
XM_034298247.1 mRNA upstream 84429 19489318 ~ 19496957 (-) True LOC113541094
XM_034298016.1 mRNA upstream 103378 19508267 ~ 19521331 (-) True pdk3a
XM_026937828.2 mRNA upstream 117726 19522615 ~ 19531363 (-) True slc51a
TU395862 other downstream 839352 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 916562 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 979823 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 980436 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 1432722 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 171219 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 195838 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 774523 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 837631 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 841677 20246566 ~ 20248461 (-) False otos

Expression Profile