RNA id: XM_034298016.1


Basic Information

Item Value
RNA id XM_034298016.1
length 2379
RNA type mRNA
GC content 0.47
exon number 11
gene id pdk3a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19507088 ~ 19521331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTTTCCAAGCCAACCAATCACAGCGCGGTCCAGCAGAGCCGCAGTGTTTCACAGCAACCGTTCAGAGGGGAAAGAAAACAATAACTGAataaatttgttgtttttttgggatTTAGTGTGATGGAAGAGCACAAGAAGGACATGGCTCCTGTTTCCGAGGATGATTTTATGATTGTTAATGAAGTGCAGCGTTTCCGTTTGAGCTTTTGATGCTTTAGATTGCAGAAACATTAGCCTACCATTATTAGCTGTGTATAATAAACAgtgcaggttttatttatttattttatttttttattcttatcaCAATGAGGTTGTCGGCGTTTTTACTGAACACTTCTGCAAAAATTGAGTATTATTCCAGATTTTCACCATCTCCTCTCTCCATCAAGCAGTTCCTGGAGTTTGGACGGGACAATGCGTGCGAGAAAACCTCGTACATGTTCCTGAGGAAGGAGCTGCCCGTGCGACTCGCCAACACCATGCGGGAGGTCAACCTGCTGCCCGACAAACTGCTGACTCAGCCCTCCGTCAGACTGGTGCAGAAATGGTACATGCAGAGTTTTCTGGAGCTGCTGGAGTATGAAAACAGGAGCCCAGACGACCCGCACGCGCTGAACGACTTTCTGGAGATTCTTATCGAGATCAGGAACAGACACAACGACGTGGTTCCCACCATGGCCCAGGGCGTGATCGAGTACAAGGAGAAGTTCGGCTTCGACCCGTTTGCCAGCTCCAACATTCAGTATTTCCTGGATCGCTTCTACACCAACCGTATCTCTTTCCGCATGCTCATCAACCAGCACACACTCCTGTTCGGTAACGACACAAACCCGGCGCATCCCAAACACATCGGCAGCATCGATCCCGCCTGTAACGTAGCCGACGTGGTTAACGATGCGTACGAGATGGCTAAGATGCTGTGCGAGCAGTACTACCCCACTGCCCCGGCGCTGAAGATTAAAGAGTTTAATGctAAAGCTCCTGACAAGCCCATCCAGGCCGTGTATGTGCCGTCGCATCTGTTCCACATGCTGTTCGAACTCTTCAAGaatgcaATGCGAGCCACAGTGGAAcataatgaagaaaataaagatgatCTTCCACCTGTTAAGGCTAAAGTGACCTTGGGGAAGGAGGATCTCTCTATAAAGaTCAGTGACCGGGGTGGAGGCGTACCTCTGAGGAAGATCGACAGGCTCTTTAATTACACCTACTCCACCGCTCCAACCCCCAGTTTAAACTCCAAACGAGTTCCACTGGCCGGATTTGGTCACGGTTTGCCGATCTCCAGACTCTACGCTCGGTACTTTCAGGGAGATTTGCAGCTCTACTCGATGGAAGGCGTTGGCACGGACGCAGTCATCTACCTGAAGGCTCTCTCCAGCGAGTCATTTGAGCGGCTGCCAGTTTTTAACAAGTCGGCCTGGCGGCACTATCAGGGAGGCCCCGGAGCGGACGACTGGAGCAACCCGAGCAAAGAGCCGCGGGACGCGTCCAAGTACAAAGCGAAGAGATaaatccaccaccaccaccagtgcactcctctctctctccttccctctcaaCTACGAGTGttatctctctccttctctctgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgagcatccCTCAGCACAGCCTCTGCGCTTTTCCCTCTTCTGAAATATCAGTCACAGCGCCCCGCCACGCCCCGCCCCGCCCCGGTGGTGAGAGAGCACAGACTTCCCCGTGCCTCGGATAGCAGAGGCCTTGACTTCCTGTCTGTAGTGCCACACGATATCATCACCTCTCTTCAGCTCACCTTAACAACAGAAAGGGAAAGTAGGGGTGTGTTTCATAACACACTGCTGCGAGATTTACACGGTAAAACGTTAGTCAGCTCCCGTAACCTTTCCCTACACGCATGAGAGCGCCATGAGAGCCGGAAGATATTTAACGTCTAAGGTACAGGAGTACATTCTTCAGAAGACCGATTCAGCAAATAAGCAGTTATAATACGTTATACAGAACTCAATATCgtgttattaatttaaaaattatttattaggtTGCAATTTTAAGGGACGTGCAAATAGAGCTGTGactgccattaaaaaaaaagtttcagggtattaaaaataaacaaattgagCTTCCTGTGAATATTTACGTACAAAATAGTGTTTACACGTCTTTATGATTCCCTTTTTTCCTCGTTTTATGCCAAACAGACACTGAAGTATAAGAAATTTAAATTATTCCAAAACCACTACCAACATTCCAGTATGAACAATACAGCACTGTAAAGATCCAGACCTTTATAAATGAGaaatagtttaatttatgtttatgtaaaatgGCAGACAGgagattttaaaaca

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396814 lncRNA downstream 80009 19391964 ~ 19428258 (-) True G335105
XR_004576978.1 lncRNA downstream 92195 19414228 ~ 19416072 (-) True LOC117595800
TU396812 lncRNA downstream 103378 19359557 ~ 19404889 (-) True G335103
TU396808 lncRNA downstream 147529 19317859 ~ 19360738 (-) True G335099
XR_004576971.1 lncRNA downstream 433001 19070338 ~ 19075266 (-) True LOC117595792
TU396859 lncRNA upstream 29709 19551040 ~ 19551530 (-) True G335149
TU396860 lncRNA upstream 39647 19560978 ~ 19564462 (-) True G335150
TU396959 lncRNA upstream 251522 19772853 ~ 19773057 (-) True G335230
TU396961 lncRNA upstream 267252 19788583 ~ 19789058 (-) True G335232
TU397159 lncRNA upstream 358561 19879892 ~ 19902336 (-) True G335404
XM_034298247.1 mRNA downstream 11310 19489318 ~ 19496957 (-) True LOC113541094
XM_034298246.1 mRNA downstream 18884 19439763 ~ 19489383 (-) False pola1
XM_034298245.1 mRNA downstream 18884 19439763 ~ 19489383 (-) True pola1
XM_026938080.2 mRNA downstream 97052 19395899 ~ 19411215 (-) True hgd
XM_034297940.1 mRNA downstream 116734 19384922 ~ 19391533 (-) False ropn1l
XM_026937828.2 mRNA upstream 1284 19522615 ~ 19531363 (-) True slc51a
XM_034298280.1 mRNA upstream 19452 19540783 ~ 19554793 (-) False zdhhc20b
XM_034298279.1 mRNA upstream 19452 19540783 ~ 19554793 (-) True zdhhc20b
XM_034298114.1 mRNA upstream 33810 19555141 ~ 19579031 (-) True nup58
XM_034298010.1 mRNA upstream 87706 19609037 ~ 19663355 (-) False phldb2b
TU395862 other downstream 988062 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1065272 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1128533 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 1129146 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 1581432 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 54777 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 79396 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 658081 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 721189 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 725235 20246566 ~ 20248461 (-) False otos

Expression Profile