RNA id: TU396939


Basic Information

Item Value
RNA id TU396939
length 357
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G335214
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19766470 ~ 19766826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGAATAGAAGTCATGTTGGTATCTGTAGCAGTAGGAATAGTAGTCATGTTGATATCTGTAGCAGTAGGAATAGAAGTCATGGGGGTATCTGTAGTAGCAGGAATAGAATTCATGTTTTTATCTCTGGTAGTAGGAATTGCAGTCATATGGGTATCTGTGGCTGTAGGAATAGAAGTCATGTTGGTATCTGTAGCAGTAGGAATAGTAGTCATGTGGGTATCTGTGGTAGTAGGAATAGAAGTCATGTTGGTATCTGTAGTAGCAGGAATAGAATTCATGGGGGTATCTGTAGTAGCAGCAATAGAATTCATGTTTTTATCTCTGGTAGTAGGAATAGCAGTCATATGGGTATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396588 lncRNA upstream 59464 19704685 ~ 19707006 (+) True G334888
TU396561 lncRNA upstream 62666 19636868 ~ 19703804 (+) False cip2a
TU396487 lncRNA upstream 177410 19561102 ~ 19589060 (+) True G334806
XR_004576958.1 lncRNA upstream 244210 19521365 ~ 19522260 (+) True LOC117595782
TU396400 lncRNA upstream 405733 19317857 ~ 19360737 (+) False dap
TU396940 lncRNA downstream 637 19767463 ~ 19768343 (+) True G335215
TU396972 lncRNA downstream 57877 19824703 ~ 19824911 (+) True G335243
TU397020 lncRNA downstream 103555 19870381 ~ 19882836 (+) False smpx
TU397022 lncRNA downstream 104070 19870896 ~ 19882836 (+) False smpx
TU397023 lncRNA downstream 104070 19870896 ~ 19882836 (+) True smpx
XM_026938138.2 mRNA upstream 16415 19740057 ~ 19750055 (+) True LOC113541258
XM_034297890.1 mRNA upstream 62699 19689030 ~ 19703771 (+) False cip2a
XM_034297889.1 mRNA upstream 62699 19689030 ~ 19703771 (+) False cip2a
XM_034297887.1 mRNA upstream 62699 19689031 ~ 19703771 (+) True cip2a
XM_034297888.1 mRNA upstream 62699 19689031 ~ 19703771 (+) False cip2a
XM_026938019.2 mRNA downstream 103566 19870392 ~ 19882353 (+) False smpx
XM_026938018.2 mRNA downstream 103606 19870432 ~ 19882353 (+) False smpx
XM_026937999.2 mRNA downstream 117221 19884047 ~ 19887557 (+) True LOC113541169
XM_026938021.2 mRNA downstream 218506 19985332 ~ 19988036 (+) True camk2n2
XM_034297988.1 mRNA downstream 283910 20050736 ~ 20112391 (+) False sh3kbp1
TU396585 other upstream 82600 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 82600 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 189397 19576111 ~ 19577073 (+) True G334838
TU396399 other upstream 405733 19339206 ~ 19360737 (+) False dap
TU396960 other downstream 21757 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 393574 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 507294 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 977923 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 977923 20744749 ~ 20764373 (+) False vipr2

Expression Profile