Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU396972 |
| length | 209 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G335243 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19824703 ~ 19824911 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04724 | Glutamatergic synapse |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU396940 | lncRNA | upstream | 56360 | 19767463 ~ 19768343 (+) | True | G335215 |
| TU396939 | lncRNA | upstream | 57877 | 19766470 ~ 19766826 (+) | True | G335214 |
| TU396588 | lncRNA | upstream | 117697 | 19704685 ~ 19707006 (+) | True | G334888 |
| TU396561 | lncRNA | upstream | 120899 | 19636868 ~ 19703804 (+) | False | cip2a |
| TU396487 | lncRNA | upstream | 235643 | 19561102 ~ 19589060 (+) | True | G334806 |
| TU397020 | lncRNA | downstream | 45470 | 19870381 ~ 19882836 (+) | False | smpx |
| TU397022 | lncRNA | downstream | 45985 | 19870896 ~ 19882836 (+) | False | smpx |
| TU397023 | lncRNA | downstream | 45985 | 19870896 ~ 19882836 (+) | True | smpx |
| TU397088 | lncRNA | downstream | 140633 | 19965544 ~ 20029491 (+) | True | G335345 |
| TU397044 | lncRNA | downstream | 160633 | 19985544 ~ 19988036 (+) | False | camk2n2 |
| XM_026938138.2 | mRNA | upstream | 74648 | 19740057 ~ 19750055 (+) | True | LOC113541258 |
| XM_034297890.1 | mRNA | upstream | 120932 | 19689030 ~ 19703771 (+) | False | cip2a |
| XM_026938019.2 | mRNA | downstream | 45481 | 19870392 ~ 19882353 (+) | False | smpx |
| XM_026938018.2 | mRNA | downstream | 45521 | 19870432 ~ 19882353 (+) | False | smpx |
| XM_026937999.2 | mRNA | downstream | 59136 | 19884047 ~ 19887557 (+) | True | LOC113541169 |
| XM_026938021.2 | mRNA | downstream | 160421 | 19985332 ~ 19988036 (+) | True | camk2n2 |
| XM_034297988.1 | mRNA | downstream | 225825 | 20050736 ~ 20112391 (+) | False | sh3kbp1 |
| TU396960 | other | upstream | 35645 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 140833 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 140833 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 247630 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396399 | other | upstream | 463966 | 19339206 ~ 19360737 (+) | False | dap |
| TU397154 | other | downstream | 335489 | 20160400 ~ 20163106 (+) | False | ccl20b |
| TU397368 | other | downstream | 449209 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 919838 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 919838 | 20744749 ~ 20764373 (+) | False | vipr2 |
