RNA id: TU397022


Basic Information

Item Value
RNA id TU397022
length 3488
lncRNA type sense_over
GC content 0.41
exon number 5
gene id smpx
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19870381 ~ 19882836 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGTCCCCTCTGTGCATCACGCTGCTATTTATAGTGAGAACAAATCCCAGATATGAGAGGAATCCCTTTACCACTCTGTAGCCTAAAGAGAGACGAAGACTGAGGGGGCAGAGAGAGGACGAGTTCCACAGAACACCGCCGCAGAACCACACGGGACCGACCTGGGAAGGACAGAGACAGGAAAAAACTAATCCAGACCGGACCCGGCCATCCCGCAACGGAAAACTTTACACACTCCAGCTGTAAGAGGATCAAAGCGGAGGCCTCTGTGCAAAATGTCTAAACAGCCATCAACAAATGTAAAAGCTTTacagGCCAACCTCAATATTCCGATGGGAGCTTTGCGTCCGGGAGCGGGACATCCTGTGAAGAGGAAAGAGGagacacaggacacagaggagGTACCGGCCGTCACTCCGGAAGAAAAGAAGCACCTTCCTGGTGCTGTGAAACTTCCAGGGCCGGCGGTTAACCTTTCCGAGATCCAGAATGTCAAAAGCGAGCTCAGATGGGTCACTAAAGACTAGACACACTCAGgtgACCCCAGCTTGCTCGTGTTAAGGAAGGAGACAGACAGCTCCACCAGCTCTACCTATTCCATTACTGATTCTATAAGACAATCTCCATCAACTCCCAAATTTCCAGCTACTGAAAACAAGACACCCATCCTTCAATGAACTGCAATATCTTGTCAAAGGTTTCCATCCCTGCAACCCACATAGCAAATTTTTTTCTGGTTCAAGAACGGATTCACATAATCCGCCACATAAAAATCCCAGACTGCAGTTATCCCAATTGCTTGCGAATTCATGGTCTAGAACACATTTCAGATCTGGTCTCTGAATCTGAGCCATCTCAAAGGCTAGATACTGAACAAAATTATGGTTCAAGAATGGCTTAGGCTATATTGGCAGATTAGAGCCACATAGCAGCCATGATAGTCCCAAATCCGTGCCAGCAGTCGTCTCTAATAACATGTAGATGTTGCTATCAAATCTCAGCCATCTCTCACCATCAAGATACTGCAAAGAATACGGTGCAGGAATGTCTGAGACTGGTTCTCCAAGTTACAGCTGCATAACTGTCATAACAGTACCAACGCTTAGCCATTAGTCATCCCTAATATTCACGCTTTATCCATTTGCAACTTCAGTATCAAATCTCAGCCCTGATACTGAGAAGAGTGTGGCCCAAGAATGATCCAAACTTCTTCTCCAGATTAGAGCGCTATAATGGCCATATTAGTACAGAATCTCAGACTGCAGTTATTGCTATTGTTGGTGCATACATAAGCTAGAACCAATTAACAATATGGTACTGAATCTCATCCATCTCTAAGCCCAAATATTGCAAATAATGATGGTCCAGACTGGTTCTCCATCTGAGAGCTGCATAACAGCCATTATAGTAGCAAATCCCAGCAAACATTCATCCCTGTTACTGGAACTTACACAAACTGAAACCTTGTTTACATCTGCTACAAAATCTTAGCCATTGTTTGGCTCAGAACTCACAAAGAATTATGACCTAATAATTATGTAGATTACAGTGGCCCAGATACTGCAAACAATATTGTCCAAGAATGGTCCAGACTGGTTCTCCATCTTAGATTAGCGCTGCATAACAGTACCAAATCCCAGCAAACAGTCAGTATTGTAGGTTTCTCTTGACCCAGATACCACAAAGAATGATGGCCCAAGAAGGCCCAGAATAACTCAccagtgaaggaaaaaacaggaaggtcatgccatggtcaaccaaatttcaaacattttggaCGTTTTGTATACTGCGAAGATTACGGCCCAAGAATGGTACCAAATCCTCTCTTAGAAACCTCAAAGAATGTTGACCACCTAGATTACAGCAGCCAATCAGTCATAATAGTACAAAATCCCAGCCAGCAATCATCACTGTTACTCATTTATGGTACTGAATTGCAGCCATCTCTTGACCCAGATACCACAAAGAATGATGGCTCATGATGACTCCGATTTGACTACCAGATGAGGCAAAAAACAACAAGGCCAAACAAATCGCAAGCATTTTGGACAAATTCCCAAACAGCCCACATGCTGTTTACCATCAGAGATGCGGCACCATCAATGTCAGACATGGCACCATGCCGACACTATGCCCCCTGACTTGATGATGCTTCTCGACCAGACAATTTTGCTGTGTAGGTATTAAAGCACATGACTCAAACATGATGAAAACCATAAACTGCACATTTTACACAGAATCATGGCAAGTAACCACTTATATTTCTGTTCTCTTTTATATCTCCTGTTTTAAATCTAAAGCGTGTGTTTTAGCAATGGTCTGATTTCATAAGAGATCTGCAAGCTCCTTTGCTGCCATGTGTGAAGTCACATATTTAAATTCCTTTTATAGAGCCTGAATCGTAATGTAGCATGATGATTAGTCTGTGTTGTTCGTGTTAATAGTGGCAAATGTCGTCTCACTTCATTTATTCCGAACAAATGTGAGACActgaaaaacatgttttcatacTTCATGGCCTTTTCTTTTGAAccactatatatttttttgcctttCCTTGCCATTGTTCTCTGGCTTAGTTTTGAGAGCGTGTAGGCTGACATGCAATAAAAACACGATTTCTCAGTGTCACGATGTAGGAGGGTGAAGCAATCACATGTTGTCTTTGAGCAAACAGAACTGAATTTCCAACACTTTGTCACTGTTTTATTAGCTCTTAAATGTGATATTTGTGAagaacattttctctctttatttctcctgTTGAACAGCAGCACATCAGTGAAAGTGTCCTTATTGAAGATTCTGAGTTCTGACCAGAGTTAGAAGggctaaaagaaaataatgatatCATGTGTGAAGTATAATAAACACTTgggtcaaaaataaaatgtcatgcCACATAACTGATTTCCTGTCTTCTAAATGGTACACTGATATTTTTGTGGATACTATCTCTTAAGAGAGTGATTAAAtgtcattataccacagcactgcaattctggattgtgattggtcagaaggtgatagtagcgcagctgcaaatcgcaggtttatctTAAACctcattctaatattttattgtttctatagtaacagctcattcacagagaccactccatataaaaaaaattgtgtaatcattgacaaggttattgtaaagaaatgtttatttaacatttatggaaggagtctccactttcagtgctttgtaacagtcagaggtaaagctgtaactttaagcttctgacatcttcaggacagaggagtttacactttgcagtttctctgtaacatgacaagagcttttgtcttattaaattcaagaaagagaaaaaaagaggctggtgagggaaagactgtttatagctgctataacataagaacatatgttttgtggatgttccacaacattaaatttaactataaatggataaaaacgtATGATGGgtcattctttaatcaataaaaaaatgtactaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396972 lncRNA upstream 45985 19824703 ~ 19824911 (+) True G335243
TU396940 lncRNA upstream 102553 19767463 ~ 19768343 (+) True G335215
TU396939 lncRNA upstream 104070 19766470 ~ 19766826 (+) True G335214
TU396588 lncRNA upstream 163890 19704685 ~ 19707006 (+) True G334888
TU396561 lncRNA upstream 167092 19636868 ~ 19703804 (+) False cip2a
TU397088 lncRNA downstream 82708 19965544 ~ 20029491 (+) True G335345
TU397044 lncRNA downstream 102708 19985544 ~ 19988036 (+) False camk2n2
TU397127 lncRNA downstream 175538 20058374 ~ 20058822 (+) True G335377
TU397129 lncRNA downstream 208987 20091823 ~ 20191634 (+) False G335379
TU397130 lncRNA downstream 208987 20091823 ~ 20191789 (+) True G335379
XM_026938138.2 mRNA upstream 120841 19740057 ~ 19750055 (+) True LOC113541258
XM_034297890.1 mRNA upstream 167125 19689030 ~ 19703771 (+) False cip2a
XM_026937999.2 mRNA downstream 1211 19884047 ~ 19887557 (+) True LOC113541169
XM_026938021.2 mRNA downstream 102496 19985332 ~ 19988036 (+) True camk2n2
XM_034297988.1 mRNA downstream 167900 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297991.1 mRNA downstream 167900 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297987.1 mRNA downstream 167900 20050736 ~ 20112390 (+) True sh3kbp1
TU396960 other upstream 81838 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 187026 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 187026 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 293823 19576111 ~ 19577073 (+) True G334838
TU396402 other upstream 510159 19339206 ~ 19360737 (+) False dap
TU397154 other downstream 277564 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 391284 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 861913 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 861913 20744749 ~ 20764373 (+) False vipr2

Expression Profile