RNA id: TU397044


Basic Information

Item Value
RNA id TU397044
length 2215
lncRNA type sense_over
GC content 0.40
exon number 2
gene id camk2n2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19985332 ~ 19988036 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCGAACCCGAACCTGAACCTGTTCCCGTTTTCCAGTTttgaacatctctctctctctctctctctcacacacacacacacacacactttcttgtCTTCAGCCATGTCCGAGGTTTTGCCCTACAGTGAGGGGAAGATGAACGGCTACGGGCCGGACGACGAGGTCGGACAAATGTCGTTCAGCTGCCGGCTGCAGGACACCAACTCGTTTTTCGGCGCGTCGCAGTCAAAAAGGCCGCCGAAACTCGGACAGATCGGACGCGCAAAACACGtgGTCATTGAAGACGACCGAATAGACGAGGTGCTGAAAGGCATGGCGGATAAACCGTCCCCCGGTGTGTAGAGCCTCCAGACGCATAAGaacctttttttgcatttaatcaCCGGTTTGAAGCACCGCATGTAAAGCAGTGAGGAGCGACTGAGAAGCCTCTGAGGATCAGGATGCTGAGAGCGGACTGAggaagagatgatgatgatgatgatgatgatgatgatggactgACAGGACATGACATGACCGCGGGTGTTGGGTTTTAAGGCTGAAAAAATAATAAGCGGAATTTTCTTTCCAAGCTGCTGGTTTAGCTTATAATCCTCCAAACAAAACCCATCTAGATAAATCCACCTCCTTCATCACAGCGATGAGAAGAAGACCTGCTCGGGTCCGACTTCATCCGTCATCACGATATCAGTATTCAGTATCGGACATCGGTATCGGTTTTAGTGCCACGTTTCATCGATGTAGCTGCGTTCACGTGCTGTCGGAGATCGTAGGAGTAAATACGGGTCACGAGCTCACACATGACGCAACACTCAGTTTTAATAGTAGATAGAAATGAAATGCAACAGTTGATGATAATTgtgtgcatgcaaaaaaaaacctgcatgacATTTCAACTGTAGGATTATTCAGCgctatttaatattaatgtgttagACTAGAACTGTGCACTCTTAGAAATAACGGTTCCAACCTGCACTCTTTCCTGTCAGGCAGTTGCTACCTTCCAAGGTACATGTTGTTCATCATTAATTAAGCTTTAAAGGGACATCATTTCTCCTTTAGCTCCAATGAAACACCTTCAATTAGTTTTACAACAACAAGAAAAGTACCTTGGCACCTTTCCCTGTCCCACTGCAGCCTGAACATCAAGTCACAGTTTGTGTTTGCTTGCTATAGGCTAGCTGGGGTGTTCATTACGTAACACCCACACACCATGctctgttgttgtttatttccaCTTCCGGCTTCCGCGTCATGCCCTAATTACACACTTCCGACCCGGAAACATAGGAGCGCTTGAACGTAGCATGAGCttattttaaagtttaacatcacacacacacacacacacacacacggaacagGCCTGGTcctggtgggtgtgtgtgtcaacCAGAGAAGAAGACATCTGCAAATCTGAGTAAAATATGCTAATGATATGTTAATGATATGATAATGATATGGTAATGATATGATAATTATCCCCATAAACACAGCAGGTTAAGAGCAGATGAACATGAAGTTTACATCCAACGCCAGCAAGGATCTAAAAGAACACAGAAGTACTAATAatcattctgatttttttaaaggacaaGGAGGATATCTAGTTTATTtcctttcatcttttttttaatgtttggcGTCGTGTATATATGAAAATCTCTTGGTGATTGAGTTTGCATGAACTTTGTGCCAATGCGGGTGTCTCTAAAACCCCTTCTTTTTACTGAagttaatatttgtatttaatattttttataaataaatatttgttactTAATATGGTATGCTAGTGAGCATTcagaggaataataataataataataataataataataataataataataataataatggaatgTTTCGGATTTTTGAATACATCAGCATATTATTATTGCTTGTCATTccaaaactgaaaatatttttactccATTTCATTTTTCCATCAAGTCATCTAACACAGTgttattcacttttattttaaaatatctacttatttatttatttatttatttattttattttatactattcTGTATGGTTTGTTGTGCATGAAATCTTGATATTTtccaaatgaatgaacatttttataaagCGAAAAAAAAGTTTCGTCTCAGCATTTATGGAGAATGAACCATTGTGTACTCTGATGCCATTTCACTGTACTTGCTGAGTTAATAAATAGAGACAGAAGTTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397020 lncRNA upstream 102708 19870381 ~ 19882836 (+) False smpx
TU397022 lncRNA upstream 102708 19870896 ~ 19882836 (+) False smpx
TU397023 lncRNA upstream 102708 19870896 ~ 19882836 (+) True smpx
TU396972 lncRNA upstream 160633 19824703 ~ 19824911 (+) True G335243
TU396940 lncRNA upstream 217201 19767463 ~ 19768343 (+) True G335215
TU397127 lncRNA downstream 70338 20058374 ~ 20058822 (+) True G335377
TU397129 lncRNA downstream 103787 20091823 ~ 20191634 (+) False G335379
TU397130 lncRNA downstream 103787 20091823 ~ 20191789 (+) True G335379
TU397133 lncRNA downstream 186742 20174778 ~ 20189323 (+) True G335381
TU397134 lncRNA downstream 186953 20174989 ~ 20189323 (+) False G335381
XM_026937999.2 mRNA upstream 97987 19884047 ~ 19887557 (+) True LOC113541169
XM_026938019.2 mRNA upstream 103191 19870392 ~ 19882353 (+) False smpx
XM_026938018.2 mRNA upstream 103191 19870432 ~ 19882353 (+) False smpx
XM_026938138.2 mRNA upstream 235489 19740057 ~ 19750055 (+) True LOC113541258
XM_034297888.1 mRNA upstream 281773 19689031 ~ 19703771 (+) False cip2a
XM_034297988.1 mRNA downstream 62700 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297991.1 mRNA downstream 62700 20050736 ~ 20112391 (+) False sh3kbp1
XM_034297987.1 mRNA downstream 62700 20050736 ~ 20112390 (+) True sh3kbp1
XM_034297990.1 mRNA downstream 62701 20050737 ~ 20112390 (+) False sh3kbp1
XM_034297992.1 mRNA downstream 92190 20080226 ~ 20112390 (+) False sh3kbp1
TU396960 other upstream 196486 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 301674 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 301674 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 408471 19576111 ~ 19577073 (+) True G334838
TU396402 other upstream 624807 19339206 ~ 19360737 (+) False dap
TU397154 other downstream 172364 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 286084 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 756713 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 756713 20744749 ~ 20764373 (+) False vipr2

Expression Profile