Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU397088 |
| length | 356 |
| lncRNA type | sense_over |
| GC content | 0.56 |
| exon number | 2 |
| gene id | G335345 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 19965544 ~ 20029491 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397020 | lncRNA | upstream | 82708 | 19870381 ~ 19882836 (+) | False | smpx |
| TU397022 | lncRNA | upstream | 82708 | 19870896 ~ 19882836 (+) | False | smpx |
| TU397023 | lncRNA | upstream | 82708 | 19870896 ~ 19882836 (+) | True | smpx |
| TU396972 | lncRNA | upstream | 140633 | 19824703 ~ 19824911 (+) | True | G335243 |
| TU396940 | lncRNA | upstream | 197201 | 19767463 ~ 19768343 (+) | True | G335215 |
| TU397127 | lncRNA | downstream | 28883 | 20058374 ~ 20058822 (+) | True | G335377 |
| TU397129 | lncRNA | downstream | 62332 | 20091823 ~ 20191634 (+) | False | G335379 |
| TU397130 | lncRNA | downstream | 62332 | 20091823 ~ 20191789 (+) | True | G335379 |
| TU397133 | lncRNA | downstream | 145287 | 20174778 ~ 20189323 (+) | True | G335381 |
| TU397134 | lncRNA | downstream | 145498 | 20174989 ~ 20189323 (+) | False | G335381 |
| XM_026937999.2 | mRNA | upstream | 77987 | 19884047 ~ 19887557 (+) | True | LOC113541169 |
| XM_026938019.2 | mRNA | upstream | 83191 | 19870392 ~ 19882353 (+) | False | smpx |
| XM_026938018.2 | mRNA | upstream | 83191 | 19870432 ~ 19882353 (+) | False | smpx |
| XM_026938138.2 | mRNA | upstream | 215489 | 19740057 ~ 19750055 (+) | True | LOC113541258 |
| XM_034297890.1 | mRNA | upstream | 261773 | 19689030 ~ 19703771 (+) | False | cip2a |
| XM_034297988.1 | mRNA | downstream | 21245 | 20050736 ~ 20112391 (+) | False | sh3kbp1 |
| XM_034297991.1 | mRNA | downstream | 21245 | 20050736 ~ 20112391 (+) | False | sh3kbp1 |
| XM_034297987.1 | mRNA | downstream | 21245 | 20050736 ~ 20112390 (+) | True | sh3kbp1 |
| XM_034297990.1 | mRNA | downstream | 21246 | 20050737 ~ 20112390 (+) | False | sh3kbp1 |
| XM_034297992.1 | mRNA | downstream | 50735 | 20080226 ~ 20112390 (+) | False | sh3kbp1 |
| TU396960 | other | upstream | 176486 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 281674 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 281674 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 388471 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396402 | other | upstream | 604807 | 19339206 ~ 19360737 (+) | False | dap |
| TU397154 | other | downstream | 130909 | 20160400 ~ 20163106 (+) | False | ccl20b |
| TU397368 | other | downstream | 244629 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 715258 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 715258 | 20744749 ~ 20764373 (+) | False | vipr2 |
