RNA id: TU397134


Basic Information

Item Value
RNA id TU397134
length 369
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G335381
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20174778 ~ 20189323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattattattattattattattattattattattattattattaacgataaaatacagtatataaaaatttgatatttataaatgaatcagCAGAAGTAACCTGCTGTAAGCACACGGTTCGCGACACGTGCACTTGTTTCTCAGTTTCTGACTTGCTGAGGTTTGATTTAACCCTCGACGGCGCAGTCGTGTCCTAACGGGTCAGAATTAAAAAGCTAATCGGATGTTTAATTCTGTTTCATTCACTTGCACTTGAACGAGAGTCCAAACGAAATTCCTcgcgggggaaaaaaaacactgcttttgGGTCATGTTTTTTGTCATGTATGATTTTTGACCTGTTTTGCATGGAGAGAAATGTGTttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397127 lncRNA upstream 116167 20058374 ~ 20058822 (+) True G335377
TU397088 lncRNA upstream 145498 19965544 ~ 20029491 (+) True G335345
TU397044 lncRNA upstream 186953 19985544 ~ 19988036 (+) False camk2n2
TU397022 lncRNA upstream 292153 19870896 ~ 19882836 (+) False smpx
TU397137 lncRNA downstream 18201 20207524 ~ 20208617 (+) True G335383
TU397353 lncRNA downstream 71248 20260571 ~ 20260807 (+) True G335558
TU397355 lncRNA downstream 80232 20269555 ~ 20269825 (+) False mynn
TU397361 lncRNA downstream 96758 20286081 ~ 20371855 (+) True G335563
TU397381 lncRNA downstream 111263 20300586 ~ 20300899 (+) True G335582
XM_026938015.2 mRNA upstream 7842 20164767 ~ 20167147 (+) True LOC113541177
XM_026938016.2 mRNA upstream 11953 20160267 ~ 20163036 (+) True ccl20b
XM_026937987.2 mRNA upstream 22940 20116014 ~ 20152049 (+) False map3k15
XM_026937990.2 mRNA downstream 4737 20194060 ~ 20207270 (+) False tnk2a
XM_026937993.2 mRNA downstream 4737 20194060 ~ 20207270 (+) False tnk2a
XM_026937991.2 mRNA downstream 5849 20195172 ~ 20207270 (+) True tnk2a
XM_026937992.2 mRNA downstream 5849 20195172 ~ 20207270 (+) False tnk2a
XM_026938005.2 mRNA downstream 26771 20216094 ~ 20228940 (+) False tmtopsb
TU397154 other upstream 11883 20160400 ~ 20163106 (+) False ccl20b
TU396960 other upstream 385931 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 491119 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 491119 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 597916 19576111 ~ 19577073 (+) True G334838
TU397368 other downstream 84797 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 555426 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 555426 20744749 ~ 20764373 (+) False vipr2