Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU397137 |
| length | 1094 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G335383 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 20207524 ~ 20208617 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0042136 | neurotransmitter biosynthetic process | biological_process |
| GO:0009448 | gamma-aminobutyric acid metabolic process | biological_process |
| GO:0009449 | gamma-aminobutyric acid biosynthetic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397130 | lncRNA | upstream | 15735 | 20091823 ~ 20191789 (+) | True | G335379 |
| TU397129 | lncRNA | upstream | 15890 | 20091823 ~ 20191634 (+) | False | G335379 |
| TU397133 | lncRNA | upstream | 18201 | 20174778 ~ 20189323 (+) | True | G335381 |
| TU397134 | lncRNA | upstream | 18201 | 20174989 ~ 20189323 (+) | False | G335381 |
| TU397127 | lncRNA | upstream | 148702 | 20058374 ~ 20058822 (+) | True | G335377 |
| TU397353 | lncRNA | downstream | 51954 | 20260571 ~ 20260807 (+) | True | G335558 |
| TU397355 | lncRNA | downstream | 60938 | 20269555 ~ 20269825 (+) | False | mynn |
| TU397361 | lncRNA | downstream | 77464 | 20286081 ~ 20371855 (+) | True | G335563 |
| TU397381 | lncRNA | downstream | 91969 | 20300586 ~ 20300899 (+) | True | G335582 |
| TU397363 | lncRNA | downstream | 155800 | 20364417 ~ 20366758 (+) | True | G335564 |
| XM_026937990.2 | mRNA | upstream | 254 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937993.2 | mRNA | upstream | 254 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937991.2 | mRNA | upstream | 254 | 20195172 ~ 20207270 (+) | True | tnk2a |
| XM_026937992.2 | mRNA | upstream | 254 | 20195172 ~ 20207270 (+) | False | tnk2a |
| XM_034297993.1 | mRNA | upstream | 18872 | 20173100 ~ 20188652 (+) | True | tfr1b |
| XM_026938005.2 | mRNA | downstream | 7477 | 20216094 ~ 20228940 (+) | False | tmtopsb |
| XM_026938006.2 | mRNA | downstream | 7477 | 20216094 ~ 20228734 (+) | False | tmtopsb |
| XM_026938007.2 | mRNA | downstream | 7477 | 20216094 ~ 20225632 (+) | True | tmtopsb |
| XM_026938008.2 | mRNA | downstream | 7477 | 20216094 ~ 20224832 (+) | False | tmtopsb |
| XM_026938009.2 | mRNA | downstream | 7477 | 20216094 ~ 20224580 (+) | False | tmtopsb |
| TU397154 | other | upstream | 44418 | 20160400 ~ 20163106 (+) | False | ccl20b |
| TU396960 | other | upstream | 418466 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 523654 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 523654 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 630451 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU397368 | other | downstream | 65503 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 536132 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 536132 | 20744749 ~ 20764373 (+) | False | vipr2 |
