Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU397154 |
| length | 850 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 4 |
| gene id | ccl20b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 20160267 ~ 20163106 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397127 | lncRNA | upstream | 101578 | 20058374 ~ 20058822 (+) | True | G335377 |
| TU397088 | lncRNA | upstream | 130909 | 19965544 ~ 20029491 (+) | True | G335345 |
| TU397044 | lncRNA | upstream | 172364 | 19985544 ~ 19988036 (+) | False | camk2n2 |
| TU397020 | lncRNA | upstream | 277564 | 19870381 ~ 19882836 (+) | False | smpx |
| TU397022 | lncRNA | upstream | 277564 | 19870896 ~ 19882836 (+) | False | smpx |
| TU397133 | lncRNA | downstream | 11672 | 20174778 ~ 20189323 (+) | True | G335381 |
| TU397134 | lncRNA | downstream | 11883 | 20174989 ~ 20189323 (+) | False | G335381 |
| TU397137 | lncRNA | downstream | 44418 | 20207524 ~ 20208617 (+) | True | G335383 |
| TU397353 | lncRNA | downstream | 97465 | 20260571 ~ 20260807 (+) | True | G335558 |
| TU397355 | lncRNA | downstream | 106449 | 20269555 ~ 20269825 (+) | False | mynn |
| XM_026937986.2 | mRNA | upstream | 8351 | 20116014 ~ 20152049 (+) | True | map3k15 |
| XM_026937987.2 | mRNA | upstream | 8351 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_026937988.2 | mRNA | upstream | 8351 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_026937989.2 | mRNA | upstream | 8351 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_034297988.1 | mRNA | upstream | 48009 | 20050736 ~ 20112391 (+) | False | sh3kbp1 |
| XM_026938015.2 | mRNA | downstream | 1661 | 20164767 ~ 20167147 (+) | True | LOC113541177 |
| XM_034297993.1 | mRNA | downstream | 9994 | 20173100 ~ 20188652 (+) | True | tfr1b |
| XM_026937990.2 | mRNA | downstream | 30954 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937993.2 | mRNA | downstream | 30954 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937991.2 | mRNA | downstream | 32066 | 20195172 ~ 20207270 (+) | True | tnk2a |
| TU396960 | other | upstream | 371342 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 476530 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 476530 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 583327 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396399 | other | upstream | 799663 | 19339206 ~ 19360737 (+) | False | dap |
| TU397368 | other | downstream | 111014 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 581643 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 581643 | 20744749 ~ 20764373 (+) | False | vipr2 |
