Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026938016.2 |
| length | 913 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | ccl20b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 20160267 ~ 20163106 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397127 | lncRNA | upstream | 101445 | 20058374 ~ 20058822 (+) | True | G335377 |
| TU397088 | lncRNA | upstream | 130776 | 19965544 ~ 20029491 (+) | True | G335345 |
| TU397044 | lncRNA | upstream | 172231 | 19985544 ~ 19988036 (+) | False | camk2n2 |
| TU397022 | lncRNA | upstream | 277431 | 19870896 ~ 19882836 (+) | False | smpx |
| TU397133 | lncRNA | downstream | 11742 | 20174778 ~ 20189323 (+) | True | G335381 |
| TU397134 | lncRNA | downstream | 11953 | 20174989 ~ 20189323 (+) | False | G335381 |
| TU397137 | lncRNA | downstream | 44488 | 20207524 ~ 20208617 (+) | True | G335383 |
| TU397353 | lncRNA | downstream | 97535 | 20260571 ~ 20260807 (+) | True | G335558 |
| TU397355 | lncRNA | downstream | 106519 | 20269555 ~ 20269825 (+) | False | mynn |
| XM_026937986.2 | mRNA | upstream | 8218 | 20116014 ~ 20152049 (+) | True | map3k15 |
| XM_026937987.2 | mRNA | upstream | 8218 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_026937988.2 | mRNA | upstream | 8218 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_026937989.2 | mRNA | upstream | 8218 | 20116014 ~ 20152049 (+) | False | map3k15 |
| XM_034297988.1 | mRNA | upstream | 47876 | 20050736 ~ 20112391 (+) | False | sh3kbp1 |
| XM_026938015.2 | mRNA | downstream | 1731 | 20164767 ~ 20167147 (+) | True | LOC113541177 |
| XM_034297993.1 | mRNA | downstream | 10064 | 20173100 ~ 20188652 (+) | True | tfr1b |
| XM_026937990.2 | mRNA | downstream | 31024 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937993.2 | mRNA | downstream | 31024 | 20194060 ~ 20207270 (+) | False | tnk2a |
| XM_026937991.2 | mRNA | downstream | 32136 | 20195172 ~ 20207270 (+) | True | tnk2a |
| TU396960 | other | upstream | 371209 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 476397 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 476397 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 583194 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU396402 | other | upstream | 799530 | 19339206 ~ 19360737 (+) | False | dap |
| TU397368 | other | downstream | 111084 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 581713 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 581713 | 20744749 ~ 20764373 (+) | False | vipr2 |
