Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU397353 |
| length | 237 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G335558 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 20260571 ~ 20260807 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU397137 | lncRNA | upstream | 51954 | 20207524 ~ 20208617 (+) | True | G335383 |
| TU397130 | lncRNA | upstream | 68782 | 20091823 ~ 20191789 (+) | True | G335379 |
| TU397129 | lncRNA | upstream | 68937 | 20091823 ~ 20191634 (+) | False | G335379 |
| TU397133 | lncRNA | upstream | 71248 | 20174778 ~ 20189323 (+) | True | G335381 |
| TU397134 | lncRNA | upstream | 71248 | 20174989 ~ 20189323 (+) | False | G335381 |
| TU397355 | lncRNA | downstream | 8748 | 20269555 ~ 20269825 (+) | False | mynn |
| TU397361 | lncRNA | downstream | 25274 | 20286081 ~ 20371855 (+) | True | G335563 |
| TU397381 | lncRNA | downstream | 39779 | 20300586 ~ 20300899 (+) | True | G335582 |
| TU397363 | lncRNA | downstream | 103610 | 20364417 ~ 20366758 (+) | True | G335564 |
| TU397360 | lncRNA | downstream | 108315 | 20369122 ~ 20371056 (+) | False | G335563 |
| XM_026938013.2 | mRNA | upstream | 641 | 20254383 ~ 20259930 (+) | False | LOC113541175 |
| XM_026938011.2 | mRNA | upstream | 641 | 20254764 ~ 20259930 (+) | False | LOC113541175 |
| XM_026938010.2 | mRNA | upstream | 642 | 20254383 ~ 20259929 (+) | True | LOC113541175 |
| XM_026938005.2 | mRNA | upstream | 31631 | 20216094 ~ 20228940 (+) | False | tmtopsb |
| XM_026938006.2 | mRNA | upstream | 31837 | 20216094 ~ 20228734 (+) | False | tmtopsb |
| XM_026937994.2 | mRNA | downstream | 1061 | 20261868 ~ 20270565 (+) | True | mynn |
| XM_034298098.1 | mRNA | downstream | 13348 | 20274155 ~ 20281252 (+) | True | lrrc34 |
| XM_034298099.1 | mRNA | downstream | 13348 | 20274155 ~ 20281252 (+) | False | lrrc34 |
| XM_026938059.2 | mRNA | downstream | 56921 | 20317728 ~ 20333594 (+) | True | si:ch211-230g15.5 |
| XM_026938063.2 | mRNA | downstream | 56921 | 20317728 ~ 20333594 (+) | False | si:ch211-230g15.5 |
| TU397154 | other | upstream | 97465 | 20160400 ~ 20163106 (+) | False | ccl20b |
| TU396960 | other | upstream | 471513 | 19788583 ~ 19789058 (+) | True | G335231 |
| TU396585 | other | upstream | 576701 | 19678481 ~ 19683870 (+) | True | si:ch73-264p11.1 |
| TU396584 | other | upstream | 576701 | 19679997 ~ 19683870 (+) | False | si:ch73-264p11.1 |
| TU396524 | other | upstream | 683498 | 19576111 ~ 19577073 (+) | True | G334838 |
| TU397368 | other | downstream | 13313 | 20274120 ~ 20275691 (+) | False | lrrc34 |
| XR_003402672.2 | other | downstream | 483942 | 20744749 ~ 20764373 (+) | True | vipr2 |
| XR_003402673.2 | other | downstream | 483942 | 20744749 ~ 20764373 (+) | False | vipr2 |
