RNA id: TU397355


Basic Information

Item Value
RNA id TU397355
length 271
lncRNA type sense_over
GC content 0.39
exon number 1
gene id mynn
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20261868 ~ 20270565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTACATACTGACATCGAcgaagcaaaaaaataaataaaaaaagacgcAACTGGACGAGAGCTGaaactttgtttaatttaaattcgGGGAGAACGACGTTATCAAACGCTGTTTGAACAAATGGTACGTAATCGCTCTGTTTCGGAGGAGATTTTTCGGGAAGTTTGCGATAAATGTCGTTCTGTCAAAGTGGCGTTTGGCGACTGGACTAAACATCGAGAAGGAAATGGTCTACTTAAGAGGAAATACAGAGAGTGCATTAAACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397353 lncRNA upstream 8748 20260571 ~ 20260807 (+) True G335558
TU397137 lncRNA upstream 60938 20207524 ~ 20208617 (+) True G335383
TU397130 lncRNA upstream 77766 20091823 ~ 20191789 (+) True G335379
TU397129 lncRNA upstream 77921 20091823 ~ 20191634 (+) False G335379
TU397361 lncRNA downstream 16256 20286081 ~ 20371855 (+) True G335563
TU397381 lncRNA downstream 30761 20300586 ~ 20300899 (+) True G335582
TU397363 lncRNA downstream 94592 20364417 ~ 20366758 (+) True G335564
TU397360 lncRNA downstream 99297 20369122 ~ 20371056 (+) False G335563
TU397392 lncRNA downstream 108582 20378407 ~ 20380717 (+) True G335593
XM_026938013.2 mRNA upstream 9625 20254383 ~ 20259930 (+) False LOC113541175
XM_026938011.2 mRNA upstream 9625 20254764 ~ 20259930 (+) False LOC113541175
XM_026938010.2 mRNA upstream 9626 20254383 ~ 20259929 (+) True LOC113541175
XM_026938008.2 mRNA upstream 44723 20216094 ~ 20224832 (+) False tmtopsb
XM_034298098.1 mRNA downstream 4330 20274155 ~ 20281252 (+) True lrrc34
XM_034298099.1 mRNA downstream 4330 20274155 ~ 20281252 (+) False lrrc34
XM_026938059.2 mRNA downstream 47903 20317728 ~ 20333594 (+) True si:ch211-230g15.5
XM_026938063.2 mRNA downstream 47903 20317728 ~ 20333594 (+) False si:ch211-230g15.5
XM_026938062.2 mRNA downstream 47903 20317728 ~ 20333594 (+) False si:ch211-230g15.5
TU397154 other upstream 106449 20160400 ~ 20163106 (+) False ccl20b
TU396960 other upstream 480497 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 585685 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 585685 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 692482 19576111 ~ 19577073 (+) True G334838
TU397368 other downstream 4295 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 474924 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 474924 20744749 ~ 20764373 (+) False vipr2