RNA id: TU397687


Basic Information

Item Value
RNA id TU397687
length 399
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G335831
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20744559 ~ 20745016 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCCATCCAGAGCAGCAGAACACAGGAACACTGCAGCCGGAACATTTCTCTCTTCTGTAGTCCCAGATTAAACCGCTCCAGATGTTCTTTACAATGTGTGTACTGAAATAATGagccttttaaaataaaatgcataaaaccTAATATGGCACAAAATATTCGAGAATTTAGAAACGCTGTGCTGCTGAGCGGTGGAGTGAAGAGAGGagtgaagagaggagaggagTGAAGAGAGGagtgaagagaggagaggagaggagagaggagtgaggagagaggagagaggagtgaggagaggagagaggagaggagagagggggttagggttagaccGGGATAATGAGCGGCACCTCCTACACTTCACTCTCTCACGCTCTCACtctccccaaacacacact

Function

GO:

id name namespace
GO:0006833 water transport biological_process

KEGG:

id description
ko00982 Drug metabolism - cytochrome P450

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397652 lncRNA downstream 82730 20660628 ~ 20661829 (-) True G335800
TU397629 lncRNA downstream 180114 20560173 ~ 20564445 (-) False stag1b
TU397267 lncRNA downstream 550178 20121516 ~ 20194381 (-) False G335498
TU397718 lncRNA upstream 177891 20922907 ~ 21002111 (-) True G335859
TU397730 lncRNA upstream 271930 21016946 ~ 21018572 (-) True G335868
TU397727 lncRNA upstream 277941 21022957 ~ 21024079 (-) True G335865
TU397729 lncRNA upstream 279325 21024341 ~ 21024574 (-) True G335867
XM_026912065.2 mRNA downstream 3680 20726533 ~ 20740879 (-) False zmynd11
XM_026912063.2 mRNA downstream 3680 20726533 ~ 20740879 (-) False zmynd11
XM_026912062.2 mRNA downstream 3681 20726533 ~ 20740878 (-) False zmynd11
XM_026912061.2 mRNA downstream 3681 20726533 ~ 20740878 (-) True zmynd11
XM_034298046.1 mRNA downstream 152943 20560090 ~ 20591616 (-) False stag1b
XM_034297845.1 mRNA upstream 266482 21011498 ~ 21013434 (-) True LOC117595766
TU397639 other downstream 132250 20610232 ~ 20612309 (-) True G335788
TU397621 other downstream 186611 20530622 ~ 20557948 (-) False fndc3bb
TU397560 other downstream 496098 20246566 ~ 20248461 (-) False otos
TU397559 other downstream 498281 20242520 ~ 20246278 (-) False cops9
TU397303 other downstream 562147 20179412 ~ 20182412 (-) True G335523

Expression Profile