Fish Transcriptome and Expression Database

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economic fish

RNA id: TU397718

Basic Information

Item	Value
RNA id	TU397718
length	239
lncRNA type	inter_gene
GC content	0.43
exon number	3
gene id	G335859
representative	True

Chromosome Information

Item	Value
chromosome id	NC_047616.1
NCBI id	CM018562.1
chromosome length	21037487
location	20922907 ~ 21002111 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome
species	striped catfish (Pangasianodon hypophthalmus)

Sequence

gggtctgcagaggtttgtagaggtttgatagggtctgtagaggtttgtagaagtttgatagtgtctgtagatgtttgatagggtctgtagagctttgtatatgtttgatagggtctgtagaggtttgatagggtctgcaggggtttgatagggtctgtagaggtttgtagaggattgatagggtctgtagaggtttgatagggtctgtagaggtttgatagggtctgtaatgGTTTGAt

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU397687	lncRNA	downstream	177891	20744559 ~ 20745016 (-)	True	G335831
TU397652	lncRNA	downstream	261078	20660628 ~ 20661829 (-)	True	G335800
TU397629	lncRNA	downstream	358462	20560173 ~ 20564445 (-)	False	stag1b
TU397272	lncRNA	downstream	731121	20138175 ~ 20191786 (-)	False	G335498
TU397730	lncRNA	upstream	14835	21016946 ~ 21018572 (-)	True	G335868
TU397727	lncRNA	upstream	20846	21022957 ~ 21024079 (-)	True	G335865
TU397729	lncRNA	upstream	22230	21024341 ~ 21024574 (-)	True	G335867
XM_026912065.2	mRNA	downstream	182028	20726533 ~ 20740879 (-)	False	zmynd11
XM_026912063.2	mRNA	downstream	182028	20726533 ~ 20740879 (-)	False	zmynd11
XM_026912062.2	mRNA	downstream	182029	20726533 ~ 20740878 (-)	False	zmynd11
XM_026912061.2	mRNA	downstream	182029	20726533 ~ 20740878 (-)	True	zmynd11
XM_034298044.1	mRNA	downstream	331291	20560090 ~ 20591616 (-)	False	stag1b
XM_034297845.1	mRNA	upstream	9387	21011498 ~ 21013434 (-)	True	LOC117595766
TU397639	other	downstream	310598	20610232 ~ 20612309 (-)	True	G335788
TU397621	other	downstream	364959	20530622 ~ 20557948 (-)	False	fndc3bb
TU397560	other	downstream	674446	20246566 ~ 20248461 (-)	False	otos
TU397559	other	downstream	676629	20242520 ~ 20246278 (-)	False	cops9
TU397303	other	downstream	740495	20179412 ~ 20182412 (-)	True	G335523

Expression Profile