RNA id: XM_034297797.1


Basic Information

Item Value
RNA id XM_034297797.1
length 3491
RNA type mRNA
GC content 0.46
exon number 3
gene id pkdc
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 397032 ~ 400945 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCGAATCATCCAATGAGATCACGACAGGAAGCAGCGGGGATGCAGAATATGACAGAAGCGCACGATAGGACGCAACACCGGAAGTTTTTCCTGCATTCATTCAATGTCATTTCTTTATGCGCTTCACGTCTGTGAGCGTTTATAACAGCTTTATGAAGCCGTGTTTCCCATCAGGATGAAGCAGGAATATCGGGATCTGATCCTCCAGGCCACGTCGGCGGAGCGTCTGCGTGTCGGCTGTGAGATCCAGACTCTGTGGAGCGGTTACGGTCGGATCGTGCGAGTTCACCTGGAGGGCTGCGAGCGTTCCTCAGTCGTCGTCAAACACGTCATGTTTCCTAAAGAGTCCCGGGACGCTGACGTGTCTCACCGCCGCAAGGTCCGGTCCTATCAGGTGGAGACGCACTGGTACAAAAACTACAGCTCTAACGAGCGCTGCCGTATCCCAGCATGCCTTGCGGCGCAGTCGTTCGGCGAGGAGCAGCTGATGGTGCTGGAGGATCTGGACGCCGCCGGCTTCCCGGGCAGGAGGACGAGCGTGAGGGACGGCGAGATTAAAGCCTGTCTGCGCTGGCTCGCTAACTTCCACGGGCTTTTCCTCGGAGTCCCTGCGCGCGGCCTGTGGCCCGTCGGAACGTACTGGCACTTAGAGACGCGTCCCGATGAGCTGGAGGCCATGACGGACCTGAAGCTGAAAGCAGCCGCTCCGGAGATCGACGCCGTCCTGAACAGCTGCCGCTTCAAAACCATCTTACACGGAGACGCCAAACTGGCCAACTTCTGCTTCTCTAAGGACGGCTGCGGCATGAAGGACGTCATCTACCTCCTGGGGAGCTGCCTGGATGAGCGCGAGTGCGAGAAAAGAGCTCCTGATTATCTGGACTTTTATTTTTCCGAGCTGAAAGGCGCAGTGccggagaaggagaagaagaacttCTCCGAGCTGGAGGACGAGTGGAGACGCATGTTCGCCTTCGCGTGGACCGATTTTCACCGCTTCCTCCTTGGCTGGATGCCCGGACACCACAAGATCAACCGCTACAGCAAGCGGCTCACACAGGAAGTGCTgaagagactgacagagagatcAGACGGAGCGAAACACTGACTCCAGTCAGACTCGCACAAGACTCGCATCAGACTCGCGTCAGACTCGCATTAGACTCACTTCAGACTCGCACAAGACTCGCATCAGACTCACATTAGACTCACATCAGACTCGTACCAGACTCGCATCAGACTCACATTAGACTCGCATCAGACTCACATTAGACTCACATCAAACTCGCATTAGACTCACTTCAGACTCGCATCAGACTCACATTCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCACATCAGACTCGCATCAGACTCGCGTCAGACTTGCATTAGACTCACTTCAGACTCGCATTAGACTCACATCAGACTCGTACCAGACTCACATTAGACTCACATCAGACTCACATCAGACTCGCATCAGACCTAACATCTCATCACTTATCAAACGCTGTTATTACACGgtgcgttctgattggctgagagtcaGGGTGAGGGGCGTGGTCTACACTGATCTGTTAGGAAGCCTTTACTCCAAACGGCTCCTTGATAATAAACACgttattacattataaacacattattatataataaacacGTTATTAAACAGAGCGACTGAGGGACTTTTCACGTCTGTAGATAAACAATGCTGCTGTAGGTCACGTTTGAGTTTGTGgcgtattaatattattttttatatttaataataataataataataattaaaggaGTACAGCAGCGAGCTCTCAGACTTCGGCTCTGTGTGTTCGCTCGTCAGTAACTCGGCTCAGTCCGTTCCTGTGTACAcgagcaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgttgaagTGCACTGATGACAGATCGGGACTCTTCAGTGTTCTCCATCAGCGTGGCTTCTCTTCTGcctctcatggtttcttcctcgtctcgtctcgtctcgtctcaGTGAGATGTTTTTCTCAGTGAGATGTTTTTCTCGTCTCTGGACTGAGATCTGCAGCCGctttcctgtaaagctgcttcgtgaTGATGTCTGATGTGTGTCGCTTCAGGCACTAAAGGAATAAACTGGAATAGAGCTGCTGTTTCACACACCGTCATCTCTGTGTCCCTGAGGCTCTGTGTAAAGCTCCGTCAGCTCGGGGTTTTACAGGAGCTCACGTCCAGACAAAGCTGAAATTCAGAGAGCGTCATTTCTCACACAGCCgctaaattctaaataaataataaagattttcattttattaaagagGAAAGTGAGTCAGTGTTTATTCACTAATGCGCAGAAACTTTAACCTGATAACaaatcagaattaaaataaCTTCACCGGTTCACACGTCCTCACCGTGTCACCGCAggagccctgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtaacgTGAGAGTGAAACGGGATTAAACGTCCTGCAGTGTGCAATAAAGCTGTTAAGAGTCTAAGCTCACCTCTAACCCAATGTTCCACACGGGAAAAACACAAATCTACTACataatacagcacacacacacacacacacacacatttctgacgCACACTCACACCTCCAGATTGTGGAAAACTTTTGAGTCAGCAGCACAAAATATTGAACCTGAGCTCACACACAACATGATACGACCTACAAgcacaatatattattataattgctctatttttattctaatttttacacttttattttaaaatgttacatgttTCTGTCacttctgttatttatttcattattattattggtttatttcaatatttttttttgacaatcttttgttttttatttctgttttttttacgTCACACTGTAAAGCACCAAGCTGCAGtttaaatggatgaaaatggctataaaataaagattattattattattattattattattattgttattattatttaaatggtgTGGTGTAAAGAGTGTATTTGAGACTGAACACTAACAAACACCAGAGTTTGGACTGAATtcagacatttaaaatttacaataaaaactAAAGGATAACGGACAAAAACATCCTAAAGGATTATTTGGTTTGTCCCAGTGACAGAACCCTTAAGTTCTCTGTAGAACCCTGTAGAACCCTGCAGCAGTGTTTCCTCTGCACAGGGTTTCACAcagaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaggatCTTCAGCATCAGCACTGCATGAAGTCTTCCTTCATCCTTCTCTTCATTCCTGTGATCCTCTCCACACGCACACAGTGCCATAAATCTGGGAATAATATAACGTGAtctgtgaaaaatatttatcatggatcctttttctcttttaaaggaaaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384525 lncRNA downstream 42400 353989 ~ 354632 (-) True G324516
TU384468 lncRNA downstream 65271 234506 ~ 331761 (-) False herpud2
TU384490 lncRNA downstream 75164 297235 ~ 321868 (-) True G324498
TU384511 lncRNA downstream 78029 315399 ~ 319003 (-) True G324504
TU384471 lncRNA downstream 147317 247960 ~ 249715 (-) True G324488
TU384573 lncRNA upstream 168644 569589 ~ 570151 (-) True G324544
TU384486 lncRNA upstream 169338 570283 ~ 575149 (-) False dyrk1b
TU384574 lncRNA upstream 181947 582892 ~ 583557 (-) True G324545
TU384579 lncRNA upstream 234759 635704 ~ 636105 (-) True G324549
XR_004576941.1 lncRNA upstream 256377 657322 ~ 658118 (-) True LOC117595770
XM_034298019.1 mRNA downstream 459 351887 ~ 396573 (-) True slc4a7
XM_034298132.1 mRNA downstream 65949 302661 ~ 331083 (-) False herpud2
XM_034298131.1 mRNA downstream 65949 318404 ~ 331083 (-) False herpud2
XM_034298130.1 mRNA downstream 65949 326945 ~ 331083 (-) True herpud2
XM_034297977.1 mRNA downstream 185563 205263 ~ 211469 (-) False LOC113523705
XM_034298287.1 mRNA upstream 3159 404104 ~ 428410 (-) False cspg5a
XM_026911151.2 mRNA upstream 3159 404104 ~ 428409 (-) False cspg5a
XM_026911144.2 mRNA upstream 3159 404104 ~ 428409 (-) False cspg5a
XM_026911142.2 mRNA upstream 3159 404104 ~ 428409 (-) True cspg5a
XM_034298289.1 mRNA upstream 3159 404104 ~ 428408 (-) False cspg5a
TU384497 other downstream 40411 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 325682 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 646638 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 969531 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 1028987 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1687314 2088259 ~ 2097435 (-) True G325145

Expression Profile