RNA id: XM_026911139.2


Basic Information

Item Value
RNA id XM_026911139.2
length 2209
RNA type mRNA
GC content 0.39
exon number 6
gene id si:ch211-225p5.8
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 664062 ~ 670835 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacgGGCTAAACTTAGCTCTGCTAAACACGAGTCGCACAGGaagacacacactgtctcaaAAAACACACTGGACTGGATTTAAAAGTCTAAAGTGGGAAAAGTTTCAGACAGAGGAGGAGATAGACTTGTTTAGATCATTTACTCCGAGGACGCTGAGGACACGGAGACGTCGCTCTGACTGAGGAGGAAATGTCACTGCTCAAGTGTTTACGAAACATTTAAGACGCGACAGCtgggatatttttatttatgaaatttattttaaagccgAGTTTCTCAAAATGTCTCCGCCAATCAGATCACTTTGTGCTCTCGgcttcattctgatgttcgCGCGGTGGTGTGATGGCAGCTGTGCCGAGGTGGACTCCATGACGGAGGCGGTGGCGGGACAGGACTTCCTGTTAGGTTGCATCTCCTGTAAGAGAAGGGAGGAAGTCAGCGGCGCTTCTACCGTGGACTGGCACTTTAAACCCGCCGGAGGAGACGAGTTCTTCCACATCTTCCATTACGATTATCCGACCTCCACCATCCTGCACGAGGACTTCAAGTCTCGTCTGGAGTGGGGTGGAACTAAAGGAACGGCGGATCTCCAGATCGGAGCCATTTACATCCGGAACGTCACGTTTAACGACACCGGCACTTACACGTGCACGTTTGAGCGCTCGCTCTTCCTCGCGCTTGGTACCGAACACGTGACCATCAAAAAAACAGTGGAGCTCACCGTCTTGGCAGAAGcGAATCGTGAGTTGACGGCGGTGATTTCGGAGATCATGATGTACGTCATCATCGTTGTGCTGCAGCTGTGGCTGATCGGGGTGCTGATTTACTGCTACAAAAAAATTTACGCTGAAAACGAAGCTCGCGAGGCCAGAAAAGCTCTGCATGCAAAAAACAAACTTATTGACTCGAAGGAGACTTGCGATGGAGTTCACTTGGAGTAGCTGCACTTTCGGAGCGATGAATCCTGGACGTTTTGCTGTTCACAAGAAGAAATATCTTTAAAGtcttaaacataaataaatttacattcgTAAGTTTGTTTAAAAGGAGGAAGTGAAGCAGCGTTAGCTTTTCTGACTTAGCCAGTGGCACTGATAACAGAATTATAAGTTACTTACTGCTATGCTAGTTTGTTAGGTTAATCTACTTACTTTACTACTAGTTTGTGaggtaacatttattttaaaggtagTATGTAAGCTAGCATGTACGATACTGTTATGATACGATCTACTGTTATGCTAGTTTGTACGATATCATGTTTACTGTTCTGCTAGTTTATTAGGTTAATCTATTTACTACTAGTTTGTGAGTTAGCATATTTTCCTGTTATGCTAGTTTGTAAGTGTTATGCTAGTTTGTAAGTTATGTTTACTATTATGCTAGTTTGCTTTATTAGTCTGTTTACTTTAAAGCAATTTGTAAGCTAGCATATTTTCCTATTATGTTAGTTTGTAAGTTATCATGTTTACTGTTATGCTAGTTTGTTGGATTAGTCTATTTACTACTAGTTTGTAAGTTAGTATATTTTCCTGTTATGCTAGTTTGTAAGTGTTATGCTAGTTTGTTGGGTTAGTCTATTTAATACTACTTTGTAAGTTAGTGTAGTTTCCTTTTATGCTAGTTTGTAAGTTATCATGTTTACTGTTATGCTAGTTTGCTGGATTAGTCTATTTACTTTAACACAAGTTGTAAGTTAACATAGTTTTCTGCTTTGCTAGTTTGTAAGTAAGCCTGTTTACTCTTATTGAAGTTTGTTGAGTTAGGCtatttactataatgctagtttataaATTAGCCTTTTAACTGTAATGTTAGTTTTCAAGTTAGTCTACTTACtgatatgtttgtttgtaagtTAGCATTTTTACTGCTATGTTAGTTTACAGTTATATTAGTAAGCTAGTCTATTTACAGATATGCTAATCTGTAAATTGGctgaattattttaatgctagtttatttaaatgcttGTTTGTTACTTAGGTTACTAGTGAACTAACAGAAGGAAACCTACAGAGTCCACATTAGATGTTTTTCGCTCAGGAATGTTAGCGCTGTTATATGTAGCATGTAGCGCAGGATGAAAGTGTGTTTATctcagagagtgaaagagaagtGTAAGTGTTAACTGgtttattattgtaatttacTGTTTTTCTGCGCTATATGACTAACAATGCAATAAAACACCGCTTTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576941.1 lncRNA downstream 5944 657322 ~ 658118 (-) True LOC117595770
TU384579 lncRNA downstream 27957 635704 ~ 636105 (-) True G324549
TU384574 lncRNA downstream 80505 582892 ~ 583557 (-) True G324545
TU384486 lncRNA downstream 88913 570283 ~ 575149 (-) False dyrk1b
TU384573 lncRNA downstream 93911 569589 ~ 570151 (-) True G324544
TU384592 lncRNA upstream 10013 680848 ~ 681481 (-) True G324562
TU384594 lncRNA upstream 24387 695222 ~ 701258 (-) False G324563
XR_004576945.1 lncRNA upstream 24484 695319 ~ 698441 (-) False LOC113524793
XR_004576944.1 lncRNA upstream 24484 695319 ~ 698441 (-) False LOC113524793
XR_004576943.1 lncRNA upstream 24484 695319 ~ 698441 (-) True LOC113524793
XM_026911160.2 mRNA downstream 22555 613922 ~ 641507 (-) True fli1rs
XM_026911137.2 mRNA downstream 51942 606087 ~ 612120 (-) True fbl
XM_026911130.2 mRNA downstream 59047 598396 ~ 605015 (-) True alkbh8
XM_034297808.1 mRNA downstream 59264 598396 ~ 604798 (-) False alkbh8
XM_034298128.1 mRNA downstream 88791 549060 ~ 575271 (-) True dyrk1b
XM_034298198.1 mRNA upstream 81807 752642 ~ 770971 (-) False scn1ba
XM_034298197.1 mRNA upstream 82402 753237 ~ 770971 (-) False scn1ba
XM_034298199.1 mRNA upstream 82408 753243 ~ 770973 (-) True scn1ba
XM_034298118.1 mRNA upstream 149787 820622 ~ 831921 (-) True mtdhb
XM_034298084.1 mRNA upstream 177000 847835 ~ 856733 (-) False ubxn11
TU384497 other downstream 307441 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 55792 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 376748 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 699641 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 759097 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1417424 2088259 ~ 2097435 (-) True G325145

Expression Profile