RNA id: XM_026911140.2


Basic Information

Item Value
RNA id XM_026911140.2
length 1974
RNA type mRNA
GC content 0.57
exon number 8
gene id zp3d.2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 530315 ~ 535250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTGGGAAAGCGCGAGCCTCTTCAGTGAGTGAATGTTTCTCAGCGTGTTTTCATGCTCGGTTATGAGGCTCATTCTGACCTCCATCTGCGCGCTCATGGGTTTGTTCTCTCCAACCGCGCGCGCCGGCGGTACAGTTCCGGTTCCGGTCCCTCTCCTTACACCGGATCCGGTCACCGGCGGAGAGCAGGAGCGGCTCGAGACGCCGTATTTGCACCTGCCCGTGTACCTGCATTACAGAAAGCCGCGCGTGGACAAGCAGCACTTCTCACCGGCGCACGTCCAGAGCCGCGAGCCGCTGCCCGAGCGCGTGCGCCAGGTCCTCGTGCCCGCGCCCAGGCGACGCCTGAAGCCCCGCGTGAGGCCGAGCGGCCCGGTGAGCGTCGCGTGCAGCGCGACGGAGATGCGCGTGCGAGTTCACACGGCGAACCTCGGAGCCAGCGGCGAGCGCGTGCACGTGAGGCTGGGCACGTGTGACGTCAGCAGAAGCACCGAGCAGAGCGTGGTATTGCAGTACGAGCTGCACGAGTGCGGAACTCAGAGACAGatCATCAATAAAACAGTTGTTTATTCCAACATGCTCCACTACACCCCTGATGCAGGTGGGTCGGGTTCTGAGGTGTTCTCCGTACCTGTGCAGTGTCGCTTTAACAGGTTCCACTACTCGTACAAGATCGGTTTCGTGCCGTCTGTTGAAAGGTTGAAGTTCTTTAAACCCATGAAAACCAAAGGCGGCGTCACGCTGACAGCCTGTGACGcGCAGTGGAACAGACTCTCTCCCGCTGAAGCTTTCGTTATCGGACAGCCGATGTACTTCGAAGCCGAAACTCTTTACGTGCCTGAGGATGAGCGGTTATTCGTGCATTTCTGTCACGTGACCACGAACGGCTCGGGTGTCTCCACGCCGCAGGTTAAGATCATCGACAACTACGGCTGCTTGATCGACAGCAAGAGCAGCAGCCGGTCCAGGTTCATAAACAGCGGCAGGAGGAACGTCATCAGGTTCACCATCGACGCCTTCACACTGCAGGGAAAAGTGCAGAAGtatCTGTTTATTCACTGCGAGATGTCGATCAGAAGCGTCGTTCCCACAGAAACGTCAAAGTCCTGCAGCTATAACCGGCTGGAGCGCAGgtGGGAGGAGCTTTACGGTGCAGACTCTGTCTGTTCGTGCTGCGACTCGTCCTGTGTCCCTGAGATGCCATCACTTGTGCGACCCTTGACGAGTGAACTGGGGGCCTTAGTGGAGCAACACCCAGAAGGAAAGAGCAGGAAGAACCCGACGCAGAGCACCGAGAGAATCTTCACACCGGAGCCGGAACATGGAATACTTACGACGGAGATCCAGCAGGAAACAATCGTTCCAGAGAGGACACTGATATTGGAGCACGAGCACAGAACAGTCACGCCGGAGGGAACGCCCACGCTGGAAAGCAAGCGTGCAGTGTCGACGCCTGAGAGCGAGCACGGAAAGATCTCAACGCCGCAGAGTACACCCACGCCGGCGGGCGAGCGCGGGGTGCTGACGCCGGCGGGCGAGGACAGAAAGATCACGCTGGAAGGTACACCCACGCCGGAGAGCGAGCAAAGAACAATGATGCCAGATAGTGAGTACGGAATACCGACGCCAGAGCACAAGTACGGAATGCTAGAGAATATGCACGGAAAGGTTGCACCGGAGGCCCCGCCCACACCGGAGAGCGAGCACAGAACGCCAACTCCAGACCATGAGCACGGAACTCCGATGCCAGACACCGACCACGAAGAGATCACGCTTTATCCGCATGAAGCTGTCAGTCCCGGAACGCTCACACCCTCAGTCAAGCAAAACACAATTACACCAGCACTCAAACACACGGAGCTACACGAGCCTTACAGGATTTTTGAGGAAGTGTTTGGACTCAGCTGAAGAGTAAAGACGCATTGCAAACCATCTTTCACTCGatggcaattaaaaaaaaatctgaaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384521 lncRNA downstream 86364 374199 ~ 443951 (-) False smarcc1a
TU384525 lncRNA downstream 175683 353989 ~ 354632 (-) True G324516
TU384468 lncRNA downstream 198554 234506 ~ 331761 (-) False herpud2
TU384573 lncRNA upstream 34339 569589 ~ 570151 (-) True G324544
TU384486 lncRNA upstream 35033 570283 ~ 575149 (-) False dyrk1b
TU384574 lncRNA upstream 47642 582892 ~ 583557 (-) True G324545
TU384579 lncRNA upstream 100454 635704 ~ 636105 (-) True G324549
XR_004576941.1 lncRNA upstream 122072 657322 ~ 658118 (-) True LOC117595770
XM_034298285.1 mRNA downstream 75492 436105 ~ 454823 (-) True smarcc1a
XM_034298286.1 mRNA downstream 75492 437294 ~ 454823 (-) False smarcc1a
XM_034298287.1 mRNA downstream 101905 404104 ~ 428410 (-) False cspg5a
XM_026911151.2 mRNA downstream 101906 404104 ~ 428409 (-) False cspg5a
XM_026911144.2 mRNA downstream 101906 404104 ~ 428409 (-) False cspg5a
XM_034298129.1 mRNA upstream 2945 538195 ~ 544033 (-) True LOC113524795
XM_034298128.1 mRNA upstream 13810 549060 ~ 575271 (-) True dyrk1b
XM_026911130.2 mRNA upstream 63146 598396 ~ 605015 (-) True alkbh8
XM_034297808.1 mRNA upstream 63146 598396 ~ 604798 (-) False alkbh8
XM_026911137.2 mRNA upstream 70837 606087 ~ 612120 (-) True fbl
TU384497 other downstream 173694 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 191377 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 512333 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 835226 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 894682 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1553009 2088259 ~ 2097435 (-) True G325145

Expression Profile