RNA id: XM_034298289.1


Basic Information

Item Value
RNA id XM_034298289.1
length 2680
RNA type mRNA
GC content 0.50
exon number 6
gene id cspg5a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 404104 ~ 428410 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacgcacacccatacacacacacacacacactctctctctctctctttgcactCCTAGAAGCTAACGGCGCGCGCGCGTGGGTTCTGTGCTGAAGATCCAGTGGTTGCGCCGCGCTCGTGCTCGTGCTTGCTCGTGTCCGTGTCCGTGCACGCGCGTGGGAGAACTCACTCTGGggtatttctttttctctgcgTCTTGCACGAGGACTTTTCGGTGCGGCGATGGAACCCGGAATAACGCGGCAAATACCATCACAGTGTTAATTAAGGAGGAGcgaaagaagaaggagaagaaggagaaggagaagaagcagGAGAAGCTGAGCGAGAAGAAATGAAGACGCGCAGAGTGGAGGACAGAACAGAGTGAGTGGATCAGCGCGCGCTCACAGAAGCTTTACAGCGAGCGGGTGCGagaacagaaatacacacatactgagTTCTCTTAGAGAAGTGTTTATTAAGAGTGTTTATTTTACTGCGCGCATGAAGAGGAACAtggggctctgtgcaggatgCTGGATCTCTGTCATGTCCGCGCTCCTCGCGCTGCTCCTCATCCCGCTGCAGGCGCAGGCTAACTCTGTGTTGGGAAACATGACCGAGTCAGCAAGCCCTTCAAACTCGACCTCCGTGCCAGCGGAAAGTGAAGGAGTGAAGCTGGATGATGAGATGTCCAAACCAGTCAGCAACATGTTCCTCATCCTCCGTTCTGGACGCAAGCCCAGAGATGGAGGGGAGCTCGGAAGTGGACTTCAGGAAGACGACCATCCTCTGACTTCCACTCCAACCACTAAAGAGATGACAACCGAGGACTTAAAAATCAGCCCTGATTCTGCGGAGACTGACCATCTTCTGCCTGAAGTGATAAAAAAGGATCTTCTTCCAAGTGCGTCCACTAAGAGCCCCTGGCATGGTACTGATGAGAAAATGGAGTCTACGGTGTTCGATTTGGACGAGAATCAAGACTCGGTCCTGGACCGACAGGAGCCTCCAACTACAATGACCCCGTTCCCTACCCATTCTCCGTCTCATACAGAATTCCTCACGGTGGATTTCTTTGACACCAGATCCCATGTTAATGAGCTCGTCCCTCCGTCTCCTACCGCCCATGAGCTTCAGGGTCGCGAACCCACCGCTTGGGCGATGCCCAACAATTACGACTACCTCACTCCGTACGATCAAACTGTCTCTCCCACCTCGGAAGAAGCCACCACCAAACCTGATGAGTACGAGGATGATCTGACCACCACgcctccaccacctccacccAGGACCTTCCGTCCTCACTTCCCAAATTCCTTTATCCCTGCTCGGGAAGAAGAACCACCCGCTAACCGTAATAAAGTGGGCAAGAGCAGCAGTGCCGAGTGTTGGACAGGCTCCATGCTCGTCAACGGGACCTGCAAGTCTCAATGCGATATGATGCCGAATTATTGTTTCAACGGGGGCCAGTGCTTCGTGCTGGAAGGAGCTGGCGTCTTCTGCAGGTGTAACATTCAGGACTACGTGTGGCACAAAGGCGCTCGCTGTGAGTCCGTCATCACCGAGTTCCAGGTCATGTGCATCGCCATCGGAGCCTCGGCGCTCACCGTGCTGCTGCTCTTCATGATCATCGTCTGCTTCGCCAAGAAACTGCACGTGCTCAAGACCGAGAACAACAAACTGCGCAAGCGCAGCAGTAAGTACCGCCCGTCGTCGGAGCAGCACAATGATAATTTCTCTCTGTCCACCATCGCTGAGGGCTCCAACCCAAACGGCGGGAAGGAGGGAGGACGATCCTAACTCCCAGAATAAGCTGGAGGACGCGGTGAAGTCTCCTCCACCCAAAGAGGACGAGTCTCTGAACATCCAGAACTCACTCACTCCTAAACACGAGAACCACAAGGTTCTGGGCGAGGAGAACTCCTCGGAGGTAAACTCGCTGCAGAACAACATGATGTAGAGGGGAAACAAAACCACAAACCACACAGATTCACCTCCACCTTCGCCACCACAAAGTCTATAATCCCGCCCCCGTCACTCTTACACCCAATGAGAGTCCACCTCTAGGTCCCGCCCCCTTTTCGCAGTCTGTTTGCCCACTTTTGCCTcgcccttcacacacacacacacacacatattacacacacacttattacacacacacacaacagtgatAGGCAATAAGATTCAACTgaatgatttgatttttttttgaacgACCAATTTGAGTGAATCAAACTGTTGATTCACTTGATTCATGACACACAGCAGCTACAGTGACCCTCGCTCACGAGTCCAGACGCATCCACTGTCTATAAACTTCCATTTAATTGGATGTTTAATTGCTGATGATGCAgttaaattgaatttttaaacaCCTTTTAACAACAGTGGGTGTTGCAGAATGATTCAATTATAAGAGTGCATTGAAAATGCAGCATGTGATGAAAACAAATGACAACAAAAAGAggacaaaatacataaaaatacagaaagagacCGTTTCTTCTTTCATCCACACCTTTAATCTTGAAGAAGAATCATAAGAATCGAGTTTGATTCATGAACTACATATGATTCACTGCCTTTGATTTGTAAATGAGAAATTAAGAACTGTGAGTTGAAccgtgagagaaaaaaaaacacttttttaatcatctaggacatgtttgatgaaaaaaaaagttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384525 lncRNA downstream 49472 353989 ~ 354632 (-) True G324516
TU384468 lncRNA downstream 72343 234506 ~ 331761 (-) False herpud2
TU384573 lncRNA upstream 141181 569589 ~ 570151 (-) True G324544
TU384486 lncRNA upstream 141875 570283 ~ 575149 (-) False dyrk1b
TU384574 lncRNA upstream 154484 582892 ~ 583557 (-) True G324545
TU384579 lncRNA upstream 207296 635704 ~ 636105 (-) True G324549
XR_004576941.1 lncRNA upstream 228914 657322 ~ 658118 (-) True LOC117595770
XM_034297797.1 mRNA downstream 3159 397032 ~ 400945 (-) False pkdc
XM_026911134.2 mRNA downstream 3174 397032 ~ 400930 (-) True pkdc
XM_034298019.1 mRNA downstream 7531 351887 ~ 396573 (-) True slc4a7
XM_034298132.1 mRNA downstream 73021 302661 ~ 331083 (-) False herpud2
XM_034298285.1 mRNA upstream 7697 436105 ~ 454823 (-) True smarcc1a
XM_034298286.1 mRNA upstream 8886 437294 ~ 454823 (-) False smarcc1a
XM_026911140.2 mRNA upstream 101907 530315 ~ 535250 (-) True zp3d.2
XM_034298129.1 mRNA upstream 109787 538195 ~ 544033 (-) True LOC113524795
XM_034298128.1 mRNA upstream 120652 549060 ~ 575271 (-) True dyrk1b
TU384497 other downstream 47483 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 298219 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 619175 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 942068 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 1001524 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1659851 2088259 ~ 2097435 (-) True G325145

Expression Profile