RNA id: XM_026911160.2


Basic Information

Item Value
RNA id XM_026911160.2
length 1672
RNA type mRNA
GC content 0.53
exon number 9
gene id fli1rs
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 613922 ~ 641507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAaattagcagcagcagcagctagTAAATGAGCGAAAGCGCGCGCGCAGCAGTGTAGCGTTCAACCCCAGCGCGAATTAAACGCCTCCAAATGCGCAAAACTCTCTCCAtgaccctcacacacacccggGATGGACTGCACTATTAAGgaagCTCTGGCGGTGGTGAGTGAAGATCAGTCCATATTTGAGCCGGCGTTTGGAAGCATGAAGTCCGAGATCACGTCTCCGGCGGCGCAGGCCGGATTCAGACAGGGATCAGAGGAAAGCACAGAGTCTGAGTGGACGAACACGTCAGCGAACAATCCTGCGAAGAAAAACGAACACGTCAACGGAGCTAGtcgtGAGTCTCCGGTGGAGGTCACCAGTGCTAAAAGAAGTCGTCACATCAGCAGTAGTGACGGAGGACAGCAGCCGTATCAGCCGTCGTACCCGGAGCCGAGGACGAGTCCACAGAGCACCACGGAGGAGAAAAGAGTCATCGTCCCCGCAGACCCGGAGGTTTGGACTCAGGACCATGTGCGTCAGTGGGTGGAGTGGGCGATTAAAGAGTACAGCCTGGTGGATGTGGACGTGTCCGTCTTCCTCCCACTGGACGGCAAGACGCTCTGCAAAATGTCGAAAGAGGACATGATGCGTCTCACGTCGCCCTACAACACCGACGTCCTGCTGTCACACCTCAACTACCTCCGCCagaGTAGTCCGACCTTCTCGTACCCAACGACCCCCACCAACACACAGCCCGCGCCGAGAATACAGGTCAAAGCCGAAAACAGTTTTGAGGAAATCAGCAGGAGAAACAGCTGGCCATCAGGGGCCATGACGGTTCCTAAAGGTTCTCCAGTGGAGCAGCAGCACAACAGCAGGATCACAGACCCTTCATCCAGAATCACTCAAGatccGTACCAAGCGTTAGGGCAGATCAGCAGCCGCCTCGCTAATCCAGGTTCAGGTCAGATCCAGCTGTGGCAGTTTTTGCTCGAGCTCCTTTCGGACAGCAGCAACGCCAACATCATCACCTGGGAAGGAACGAACGGCGAGTTTAAGATGACCGACCCGGACGAAGTGGCCAAGCGCTGGGGCGAGCGCAAGAGCAAACCCAACATGAACTACGACAAGCTGAGCCGCGCCCTGCGCTACTACTACGACAAGAACATCATGACCAAAGTGCACGGCAAGCGCTACGCCTACAAGTTCGACTTCCAGGGCATCTCTCAGGCGCACCAGAACCACCCGACCGAGGGCAACGTCCTGAAATACCAGACCGATGTGCCCTACGTCCCGGGGTACCACAGCCACCAGCCCAAAGTGAACTTCATGAACACGCACTCCGGCCCCATGCCCGTGTCCTCGAGCAGCTTTTTCCCTCCCGCCACCAACTACTGGAACTCAGCGGCCAGCGTCGTTTATCCCAGTTCACCGATGCCTCGACACCCGGCCACACACTCGCATTTAAActcttattattaaaatcacagagagaATAAATTCGGCGTCAGCACTAGTGGATGTCTTCCAACAGATCCACTGTTAGTTTGTGGAGATTTATGTCATAGAAAAGACTGTTTTTAATCATCCAGCACCAAGAAAACCAACATTTGGTCGTTTGGATAAAAAGTCTTATTATTAAAAGATGTagaataaataacaacatgtccctatttagctttttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384574 lncRNA downstream 30365 582892 ~ 583557 (-) True G324545
TU384486 lncRNA downstream 38773 570283 ~ 575149 (-) False dyrk1b
TU384573 lncRNA downstream 43771 569589 ~ 570151 (-) True G324544
TU384521 lncRNA downstream 169971 374199 ~ 443951 (-) False smarcc1a
TU384525 lncRNA downstream 259290 353989 ~ 354632 (-) True G324516
XR_004576941.1 lncRNA upstream 15815 657322 ~ 658118 (-) True LOC117595770
TU384592 lncRNA upstream 39341 680848 ~ 681481 (-) True G324562
TU384594 lncRNA upstream 53715 695222 ~ 701258 (-) False G324563
XR_004576945.1 lncRNA upstream 53812 695319 ~ 698441 (-) False LOC113524793
XR_004576944.1 lncRNA upstream 53812 695319 ~ 698441 (-) False LOC113524793
XM_026911137.2 mRNA downstream 1802 606087 ~ 612120 (-) True fbl
XM_026911130.2 mRNA downstream 8907 598396 ~ 605015 (-) True alkbh8
XM_034297808.1 mRNA downstream 9124 598396 ~ 604798 (-) False alkbh8
XM_034298128.1 mRNA downstream 38651 549060 ~ 575271 (-) True dyrk1b
XM_034298129.1 mRNA downstream 69889 538195 ~ 544033 (-) True LOC113524795
XM_026911139.2 mRNA upstream 22555 664062 ~ 670835 (-) True si:ch211-225p5.8
XM_034298198.1 mRNA upstream 111135 752642 ~ 770971 (-) False scn1ba
XM_034298197.1 mRNA upstream 111730 753237 ~ 770971 (-) False scn1ba
XM_034298199.1 mRNA upstream 111736 753243 ~ 770973 (-) True scn1ba
XM_034298118.1 mRNA upstream 179115 820622 ~ 831921 (-) True mtdhb
TU384497 other downstream 257301 350738 ~ 356621 (-) False slc4a7
TU384611 other upstream 85120 726627 ~ 727634 (-) True G324579
XR_004576952.1 other upstream 406076 1047583 ~ 1102117 (-) True nek11
TU384829 other upstream 728969 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 788425 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 1446752 2088259 ~ 2097435 (-) True G325145

Expression Profile